View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20265_high_3 (Length: 551)
Name: NF20265_high_3
Description: NF20265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20265_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 13 - 536
Target Start/End: Complemental strand, 21652674 - 21652150
Alignment:
| Q |
13 |
attctacaagcatatgttttgtaagctcatcatgcaattaaaaaatttgaatcgttacgagtgctttgaaaatcatagcatacctgaatcatatgccaga |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21652674 |
attctacaagcatatgttttgtaagctcatcatgcaattaaaaaatttgaatcgttacgggtgctttgaaaatcatagcatacctgaatcatatgccaga |
21652575 |
T |
|
| Q |
113 |
cgcaacgccaagcttctcgagaaaagactggggccataatttctacaaatctnnnnnnnnn---ggaacgattatcatgatagcctaaagaaaataaagc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||| |
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| T |
21652574 |
cgcaacgccaagcttctcgagaaaagactggggccataatttctacaaatctaaaaaaaaaaaaggaactattatcatgatagcctaatgaaaataaagc |
21652475 |
T |
|
| Q |
210 |
ctatcgaaaaagttaagttacatttaaaatttgcatcaaggaagaagaaagaccatacgcggcacaaggaggcaaatctggactaccacaccagcccggt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21652474 |
ctatcgaaaaagttaagttacatttaaaatttgcatcaaggaagaagaaagaccatacgcggcacaaggaggcaaatctggactaccacaccagcccggt |
21652375 |
T |
|
| Q |
310 |
ttctcatctgtaattcttttcaccaagaaacataaaaatgattaatatagcacattttgaaagtatggcaaagggaatctcaatagagtaatgattgaaa |
409 |
Q |
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| T |
21652374 |
ttctcatctgtaactcttttcaccaagaaacataaaaatgattaata--gcacattttgaaagtatggcaaagggaatctcaatagagtaatgattgaaa |
21652277 |
T |
|
| Q |
410 |
atagagaggaaaggaaggttaaagacatacttgtgaacttcggtatcatccctcttctttgtcatctcccaggtgaatccactattggctccgagtcccg |
509 |
Q |
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| T |
21652276 |
ttagagaggaaaggaaggttaaagacatacttgtgaacttcggtatcatccctcttctttgtcatctcccaggtgaatccactattggctccgagtcccg |
21652177 |
T |
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| Q |
510 |
gttgtgaaatctccaaaccatgttttt |
536 |
Q |
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| T |
21652176 |
gttgtgaaatctccaaaccatgttttt |
21652150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 164
Target Start/End: Original strand, 40419263 - 40419335
Alignment:
| Q |
92 |
atacctgaatcatatgccagacgcaacgccaagcttctcgagaaaagactggggccataatttctacaaatct |
164 |
Q |
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| T |
40419263 |
atacctgaagcatatgccacacacaacgccatgcttcccgagaaaaagcaggggccataatttccacaaatct |
40419335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 161
Target Start/End: Complemental strand, 37456778 - 37456711
Alignment:
| Q |
94 |
acctgaatcatatgccagacgcaacgccaagcttctcgagaaaagactggggccataatttctacaaa |
161 |
Q |
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| T |
37456778 |
acctgaatcatatgccacacgcagcgccatgcttcacgtgaaaacactggagccataatctcaacaaa |
37456711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 161
Target Start/End: Complemental strand, 39263194 - 39263127
Alignment:
| Q |
94 |
acctgaatcatatgccagacgcaacgccaagcttctcgagaaaagactggggccataatttctacaaa |
161 |
Q |
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||||||||||||||||| || |||||||| |||||||| || || ||||| |||||||| || ||||| |
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| T |
39263194 |
acctgaatcatatgccacacacaacgccatgcttctcgcgagaatactggagccataatctcaacaaa |
39263127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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