View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20265_high_4 (Length: 538)
Name: NF20265_high_4
Description: NF20265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20265_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 18 - 530
Target Start/End: Original strand, 44572997 - 44573513
Alignment:
| Q |
18 |
gttgtgggcctttacataactctgacgtgtccacaaatttcaacattttttgcgtttgtacaggtactggaggtcctgttggaaaaacactagaatccaa |
117 |
Q |
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| T |
44572997 |
gttgtgggcctttacataactctgacgtgtccacaaatttcaacattttttgcgtttgtacaggtactggaggtcctgttggaaaaacactagaatccaa |
44573096 |
T |
|
| Q |
118 |
aagtactgttgannnnnnn---ggtctttactagaaccagatattgatgtgcttattgctgagaaaattccagatttctgggacaatccagaagaaccct |
214 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44573097 |
aagtactgttgatttttttttggttctttactagaaccagatattgatgtgcttattgctgagaaaattccagatttctgggacaatccagaagaaccct |
44573196 |
T |
|
| Q |
215 |
ttgtccaatttgatttaacaacaaaa-gaatttgacaccttagagaacaataacctcagatgaagaaggactctcttcgtgtcatgtttcttcacatgaa |
313 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44573197 |
ttgtccaatttgatttaacaacaaaaagaatttgacaccttagagaacaataacctcagatgaagaaggactctcttcgtgtcatgtttcttaacatgaa |
44573296 |
T |
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| Q |
314 |
gttgtgctcctgtgacaataaatgccacannnnnnncagtgctccatttaggattgtatttcactggtgctgtacatacatgggaaaatttcttcccgct |
413 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44573297 |
gttgtgctcctgtgacaataaatgccacatttttttcagtgctccatttaggattgtatttcactggtgctgtacatacatgggaaaatttcttcccgct |
44573396 |
T |
|
| Q |
414 |
tattgcttcaaagaaacgttcatcgttaatttcttctgaccatattgttgtgtcttcaattttgttgctaagcattgttggagtgtttaatagatgttcc |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44573397 |
tattgcttcaaagaaacgttcatcgttaatttcttctgaccatattgttgtgtcttcaattttgttgctaagcattgttggagtgtttaatagatgttcc |
44573496 |
T |
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| Q |
514 |
acgtgtatggctaacct |
530 |
Q |
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| T |
44573497 |
acgtgtatggctaacct |
44573513 |
T |
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