View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20265_high_5 (Length: 485)
Name: NF20265_high_5
Description: NF20265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20265_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 3e-83; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 212 - 471
Target Start/End: Original strand, 11820318 - 11820578
Alignment:
| Q |
212 |
gaagtagaatttcaaggggagataaagaaagagacctggaaacaaggttgttgatgaatgaatcaggatggcctgatgaaaaatctttaacaaaggtcaa |
311 |
Q |
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| T |
11820318 |
gaagaagaatttcaaggggagaaaaataaagagacctggaaacaaggtttttgatgaatgaatcaggatggcctgatgagaaatctttaacaaaggtcaa |
11820417 |
T |
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| Q |
312 |
tatatttcgaataagaggccatcccaaatgaccaggaggtagagggtattgtttctttcttagtttcaaattatag-taccactcattcaatctccacac |
410 |
Q |
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| T |
11820418 |
catattgccaataaatggccatcccatatgaccagatggcaaaaggtattgattctttcttagtttcaaattatagttaccactcattcaacctccacac |
11820517 |
T |
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| Q |
411 |
aaaaatgttcacacaaaaatagcttgcaaataaaatggcacacatccaaacccaatattgt |
471 |
Q |
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| T |
11820518 |
aaaaatattaacacaaaaatagcttgccaacaaaatggcacacatccgaacccaaaattgt |
11820578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 235 - 469
Target Start/End: Original strand, 11804926 - 11805160
Alignment:
| Q |
235 |
aaagaaagagacctggaaacaaggttgttgatgaatgaatcaggatggcctgatgaaaaatctttaacaaaggtcaatatatttcgaataagaggccatc |
334 |
Q |
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| T |
11804926 |
aaagaaagagacttggaaacaaggttggtgatgaatgaatcaggatgaccagatgagaaatctttaacaaaagctaacatgttgccaatgagaggccatc |
11805025 |
T |
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| Q |
335 |
ccaaatgaccaggaggtagagggtattgtttctttcttagtttcaaattatagtaccactcattcaatctccacacaaaaatgttcacacaaaaatagct |
434 |
Q |
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| T |
11805026 |
ccaaatgaccaggaggtagagggtattgtttttttttgagtttcatattataataccactcattcaatctccacataaaattgatcaaacaaaaatagct |
11805125 |
T |
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| Q |
435 |
tgcaaataaaatggcacacatccaaacccaatatt |
469 |
Q |
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| T |
11805126 |
tgccaacaaaatggcacacatccaaacccaatatt |
11805160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 239 - 379
Target Start/End: Original strand, 11818921 - 11819061
Alignment:
| Q |
239 |
aaagagacctggaaacaaggttgttgatgaatgaatcaggatggcctgatgaaaaatctttaacaaaggtcaatatatttcgaataagaggccatcccaa |
338 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||| ||||||||||| |
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| T |
11818921 |
aaagagacttggaaacaaggttgttgatgaatgaatcaggatggcctgatgagaaatctttaacaaaggtcaacatatttccaataagtggccatcccaa |
11819020 |
T |
|
| Q |
339 |
atgaccaggaggtagagggtattgtttctttcttagtttca |
379 |
Q |
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| T |
11819021 |
atgaccaggaggcagagggtactgtttctttcttagtttca |
11819061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 11820125 - 11820264
Alignment:
| Q |
17 |
aatatccacttgtctcgattcatccaattcatcaatttctatgaagttacatggaaat--ttatgcgaactaattcgcaaaagtaccacaaactagtaca |
114 |
Q |
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||||| ||||||||| ||||| ||| ||||||||||||| ||||||||| | || ||| |||||| ||||||||| |||||||||||||||| ||||| |
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| T |
11820125 |
aatatgcacttgtcttgattcgtccgattcatcaatttccatgaagttaaaggggaatatttatgccaactaattcacaaaagtaccacaaaccagtacg |
11820224 |
T |
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| Q |
115 |
caagtaccgatttgtgggctcacaacaatgttaagaaaatt |
155 |
Q |
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||| |||| ||||| || |||||||||||||||||||||| |
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| T |
11820225 |
caaataccaatttg-cggttcacaacaatgttaagaaaatt |
11820264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 11827774 - 11827839
Alignment:
| Q |
210 |
aagaagtagaatttcaaggggagataaagaaagagacctggaaacaaggttgttgatgaatgaatc |
275 |
Q |
| |
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|||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11827774 |
aagaagaagaatttcaaggggagaaaaagaaagagacctggaaataaggttgttgatgaatgaatc |
11827839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 418 - 471
Target Start/End: Original strand, 11819058 - 11819111
Alignment:
| Q |
418 |
ttcacacaaaaatagcttgcaaataaaatggcacacatccaaacccaatattgt |
471 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11819058 |
ttcacacaaaaatagcttgcaaataaaatggcacacatccaaacccagtattgt |
11819111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 122
Target Start/End: Complemental strand, 16723941 - 16723843
Alignment:
| Q |
23 |
cacttgtctcgattcatccaattcatcaatttctatgaagttacatggaaatttatgcgaactaattcgcaaaagtaccacaaactagtacacaagtacc |
122 |
Q |
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| T |
16723941 |
cacttgtctcgatttatccagtttgtcaatttccatga-gttacaggggaatttgtgcgaaccaattcacaaaagtaccacgaaccggtacacaagtacc |
16723843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 29849054 - 29849104
Alignment:
| Q |
72 |
aatttatgcgaactaattcgcaaaagtaccacaaactagtacacaagtacc |
122 |
Q |
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||||| ||||||| |||||||||||||||||| |||| |||| |||||||| |
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| T |
29849054 |
aatttgtgcgaaccaattcgcaaaagtaccacgaactggtacgcaagtacc |
29849104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 41490093 - 41490141
Alignment:
| Q |
78 |
tgcgaactaattcgcaaaagtaccacaaactagtacacaagtaccgatt |
126 |
Q |
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||||||| |||| ||| |||||||||||| |||||||||||||||||| |
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| T |
41490093 |
tgcgaacaaattagcagaagtaccacaaaaaagtacacaagtaccgatt |
41490141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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