View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20265_high_8 (Length: 383)
Name: NF20265_high_8
Description: NF20265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20265_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 28152383 - 28152757
Alignment:
| Q |
1 |
attttgtggtgtcatttttgctgaatctaattgttggtctatgcttaagggtggtttcatagcagatacatcaggggaagctgagctctactttgaggt- |
99 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28152383 |
attttgtggtgtcatttttgcggaatctaactgttggtctatgcttaagggtggtttcatagcagatacatcaggggaagctgagctctactttgaggta |
28152482 |
T |
|
| Q |
100 |
------------tcttcataattgtatttttgtactattattcgaatgataaataaggatattatattcattaattactgattaattctccaaattttaa |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
28152483 |
cttaagtatggttcttcataattgtatttttgtactattattcgaatgataaataaggatattatattcatta----ctgattaattctccaaattataa |
28152578 |
T |
|
| Q |
188 |
tacatctgtaaaatgttgtatcatgtagagtaataatacttatgtggaaatttggatagacagtgtatccttacaaccattcacagaacaacaatggaag |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28152579 |
tacatctgtaaaatgttgtatcatgtagagtaataatacttatgtggaaatttggatagacagtgtatccttacaaccattcacagaacaacaatggaag |
28152678 |
T |
|
| Q |
288 |
tcgcatcaagatcaaagcattgaaaaggtaaacaactaactattcatataggatttcttacttagaaccaagtttaatttt |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
28152679 |
tcgcatcaagatcaaagcattgaaaaggtaaacaactaactattc--ataggatttctcacttagaaccaagtttaatttt |
28152757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 8024282 - 8024177
Alignment:
| Q |
1 |
attttgtggtgtcatttttgctgaatctaattgttggtctatgcttaagggtggtttcatagcagatacatcaggggaagctgagctctactttgaggtt |
100 |
Q |
| |
|
|||| |||||| ||||||||||| ||||||||||||| ||||||||||||||| | |||||||||||| |||| | |||||||||||| |||||||| |
|
|
| T |
8024282 |
atttggtggtgctatttttgctgagcctaattgttggtccatgcttaagggtggtcttatagcagatacaacaggagtagctgagctctattttgaggta |
8024183 |
T |
|
| Q |
101 |
cttcat |
106 |
Q |
| |
|
|||||| |
|
|
| T |
8024182 |
cttcat |
8024177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 321
Target Start/End: Complemental strand, 8024100 - 8023990
Alignment:
| Q |
211 |
tgtagagtaataatacttatgtggaaatttggatagacagtgtatccttacaaccattcacagaacaacaatggaagtcgcatcaagatcaaagcattga |
310 |
Q |
| |
|
||||||| |||||||||| ||| ||||||||| | |||| |||||||| ||||||||||||||| | ||||||| || |||||||| | ||| ||||| |
|
|
| T |
8024100 |
tgtagagcaataatacttctgtcgaaatttgggtcgacaacgtatccttgcaaccattcacagaaaagcaatggagatctcatcaagaactaagtattga |
8024001 |
T |
|
| Q |
311 |
aaaggtaaaca |
321 |
Q |
| |
|
|||||| |||| |
|
|
| T |
8024000 |
aaaggtgaaca |
8023990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 321
Target Start/End: Complemental strand, 21544476 - 21544366
Alignment:
| Q |
211 |
tgtagagtaataatacttatgtggaaatttggatagacagtgtatccttacaaccattcacagaacaacaatggaagtcgcatcaagatcaaagcattga |
310 |
Q |
| |
|
||||||| |||||||||| ||| ||||||||||| |||| | ||||| ||||| |||||| || ||||||||| ||| |||||||| |||| ||||| |
|
|
| T |
21544476 |
tgtagagcaataatacttctgttgaaatttggatcgacaacatttccttgcaacctttcacaaaaaaacaatggacgtctcatcaagaacaaaatattga |
21544377 |
T |
|
| Q |
311 |
aaaggtaaaca |
321 |
Q |
| |
|
||||||||||| |
|
|
| T |
21544376 |
aaaggtaaaca |
21544366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 21544694 - 21544596
Alignment:
| Q |
1 |
attttgtggtgtcatttttgctgaatctaattgttggtctatgcttaagggtggtttcatagcagatacatcaggggaagctgagctctactttgaggt |
99 |
Q |
| |
|
|||| |||||| ||||| |||||| | ||||||||||||||||||||||||||| ||| ||| || || ||| | |||||||||||| |||||||| |
|
|
| T |
21544694 |
atttggtggtgccatttatgctgagccgaattgttggtctatgcttaagggtggtctcacagcggacgcaacagaagtagctgagctctattttgaggt |
21544596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University