View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20265_low_13 (Length: 235)

Name: NF20265_low_13
Description: NF20265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20265_low_13
NF20265_low_13
[»] chr1 (4 HSPs)
chr1 (88-192)||(7102402-7102506)
chr1 (96-185)||(52113339-52113428)
chr1 (96-186)||(51276549-51276639)
chr1 (92-144)||(16136700-16136752)
[»] chr3 (4 HSPs)
chr3 (88-190)||(47692451-47692553)
chr3 (83-185)||(20809269-20809371)
chr3 (89-165)||(38093009-38093085)
chr3 (89-165)||(12408486-12408562)
[»] chr6 (2 HSPs)
chr6 (16-89)||(31884109-31884182)
chr6 (96-184)||(10519547-10519635)
[»] chr7 (4 HSPs)
chr7 (87-185)||(15074403-15074501)
chr7 (100-186)||(45430402-45430488)
chr7 (91-144)||(38364153-38364206)
chr7 (92-144)||(41970700-41970752)
[»] chr4 (2 HSPs)
chr4 (96-186)||(26348871-26348961)
chr4 (89-165)||(44229889-44229965)
[»] chr5 (3 HSPs)
chr5 (90-185)||(10513159-10513254)
chr5 (98-185)||(38495313-38495400)
chr5 (91-165)||(17341022-17341096)
[»] chr2 (2 HSPs)
chr2 (93-173)||(28385412-28385492)
chr2 (84-144)||(29483269-29483329)


Alignment Details
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 88 - 192
Target Start/End: Original strand, 7102402 - 7102506
Alignment:
Q  88 taaagagtaatgataagtagacacataatttgtgacacaaaaacaacaccatgggtaaaacagtcattttggtgtgaaatacagggataatttggtaatc 187  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  7102402 taaagagtaatgataagtagacacataatttgtgacgcaaaaacaacaccatggataaaacagtaattttggtgtgaaatacagggataatttggtaatc 7102501  T
Q  188 cacac 192  Q
    |||||    
T  7102502 cacac 7102506  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 52113339 - 52113428
Alignment:
Q  96 aatgataagtagacacataatttgtgacacaaaaacaacaccatgggtaaaacagtcattttggtgtgaaatacagggataatttggtaa 185  Q
    |||||||| |||||||| |||||  |||||| | |||||||||||||||||||||| ||||| ||||||| || |||| |||||||||||    
T  52113339 aatgataaatagacacacaattttagacacatatacaacaccatgggtaaaacagtaattttagtgtgaactagaggggtaatttggtaa 52113428  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 186
Target Start/End: Complemental strand, 51276639 - 51276549
Alignment:
Q  96 aatgataagtagacacataatttgtgacacaaaaacaacaccatgggtaaaacagtcattttggtgtgaaatacagggataatttggtaat 186  Q
    |||||||| | |||||| ||||||||||||||| ||||||| ||||| ||||| || |||||| |||||| || |||| ||||||||||||    
T  51276639 aatgataaatggacacacaatttgtgacacaaatacaacactatgggcaaaacggtaattttgatgtgaagtatagggttaatttggtaat 51276549  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 16136752 - 16136700
Alignment:
Q  92 gagtaatgataagtagacacataatttgtgacacaaaaacaacaccatgggta 144  Q
    |||||||||||| |||||||| ||| | ||||||||| || ||||||||||||    
T  16136752 gagtaatgataactagacacaaaatatttgacacaaatacgacaccatgggta 16136700  T

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Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 88 - 190
Target Start/End: Original strand, 47692451 - 47692553
Alignment:
Q  88 taaagagtaatgataagtagacacataatttgtgacacaaaaacaacaccatgggtaaaacagtcattttggtgtgaaatacagggataatttggtaatc 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||    
T  47692451 taaagagtaatgataagtagacacataatttgtgacacaaaaacaacaccatgggtaaaacagtaattttggtgtgaaatacagggataatttgacaatc 47692550  T
Q  188 cac 190  Q
    |||    
T  47692551 cac 47692553  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 20809371 - 20809269
Alignment:
Q  83 taaaataaagagtaatgataagtagacacataatttgtgacacaaaaacaacaccatgggtaaaacagtcattttggtgtgaaatacagggataatttgg 182  Q
    ||||| |||||| ||||||||||||||||| |||||  |||||||| ||||||||||||  |||||| | ||||||||||||| || ||||||| |||||    
T  20809371 taaaaaaaagagaaatgataagtagacacacaattttggacacaaatacaacaccatggacaaaacaataattttggtgtgaactagagggatagtttgg 20809272  T
Q  183 taa 185  Q
    |||    
T  20809271 taa 20809269  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 165
Target Start/End: Original strand, 38093009 - 38093085
Alignment:
Q  89 aaagagtaatgataagtagacacataatttgtgacacaaaaacaacaccatgggtaaaacagtcattttggtgtgaa 165  Q
    |||||| |||||||||||||||||||||||   ||||||| ||||||||||||  |||| ||| |||||||||||||    
T  38093009 aaagaggaatgataagtagacacataattttaaacacaaatacaacaccatggacaaaatagtaattttggtgtgaa 38093085  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 165
Target Start/End: Original strand, 12408486 - 12408562
Alignment:
Q  89 aaagagtaatgataagtagacacataatttgtgacacaaaaacaacaccatgggtaaaacagtcattttggtgtgaa 165  Q
    |||||| |||||||| | |||||| ||||||  ||||||| |||||| |||||| |||||||| |||||||||||||    
T  12408486 aaagagaaatgataaatggacacacaatttgaaacacaaatacaacatcatgggcaaaacagtaattttggtgtgaa 12408562  T

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Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 31884182 - 31884109
Alignment:
Q  16 agagagtaaaactcttgaaatttaagagattttgataagttgatacttggtactcttgcaaaacccataaaata 89  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31884182 agagagtaaaactcttgaaacttaagagattttgataagttgatacttggtactcttgcaaaacccataaaata 31884109  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 96 - 184
Target Start/End: Original strand, 10519547 - 10519635
Alignment:
Q  96 aatgataagtagacacataatttgtgacacaaaaacaacaccatgggtaaaacagtcattttggtgtgaaatacagggataatttggta 184  Q
    |||||||| ||||||||||||||  |||||||| ||||||||||||| |||||||||||||||||||||| || |||| ||||||||||    
T  10519547 aatgataattagacacataattttggacacaaatacaacaccatgggcaaaacagtcattttggtgtgaactagaggggtaatttggta 10519635  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 87 - 185
Target Start/End: Complemental strand, 15074501 - 15074403
Alignment:
Q  87 ataaagagtaatgataagtagacacataatttgtgacacaaaaacaacaccatgggtaaaacagtcattttggtgtgaaatacagggataatttggtaa 185  Q
    |||| ||| |||||||| |||||||| |||||  |||||| | ||||||||||||| |||||||| ||||||||||||| || |||| |||||||||||    
T  15074501 ataatgagaaatgataaatagacacacaattttagacacatatacaacaccatgggcaaaacagtaattttggtgtgaactagaggggtaatttggtaa 15074403  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 186
Target Start/End: Original strand, 45430402 - 45430488
Alignment:
Q  100 ataagtagacacataatttgtgacacaaaaacaacaccatgggtaaaacagtcattttggtgtgaaatacagggataatttggtaat 186  Q
    ||||||| |||||||||||   ||||||| || |||||||| | ||||| || |||||||||||||||| ||||  | |||||||||    
T  45430402 ataagtaaacacataatttccaacacaaatacgacaccatgtgcaaaactgtaattttggtgtgaaatataggggcattttggtaat 45430488  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 38364153 - 38364206
Alignment:
Q  91 agagtaatgataagtagacacataatttgtgacacaaaaacaacaccatgggta 144  Q
    ||||||||||||| |||||||| ||| | ||||||||| || ||||||||||||    
T  38364153 agagtaatgataactagacacaaaatatttgacacaaatacgacaccatgggta 38364206  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 41970752 - 41970700
Alignment:
Q  92 gagtaatgataagtagacacataatttgtgacacaaaaacaacaccatgggta 144  Q
    |||||||||||| |||||||| ||| | ||||||||| || ||||||||||||    
T  41970752 gagtaatgataactagacacaaaatatttgacacaaatacgacaccatgggta 41970700  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 96 - 186
Target Start/End: Complemental strand, 26348961 - 26348871
Alignment:
Q  96 aatgataagtagacacataatttgtgacacaaaaacaacaccatgggtaaaacagtcattttggtgtgaaatacagggataatttggtaat 186  Q
    ||||| ||||||||||| |||||  |||||||| |||||||||||||||||||||| ||||||||||||| || | || ||||||| ||||    
T  26348961 aatgacaagtagacacacaattttagacacaaatacaacaccatgggtaaaacagtaattttggtgtgaactagaagggtaatttgataat 26348871  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 165
Target Start/End: Complemental strand, 44229965 - 44229889
Alignment:
Q  89 aaagagtaatgataagtagacacataatttgtgacacaaaaacaacaccatgggtaaaacagtcattttggtgtgaa 165  Q
    |||||| |||||||| | |||||| |||||| |||||||| ||||||||||||| |||||||| |||||||||||||    
T  44229965 aaagagaaatgataaatggacacacaatttgagacacaaatacaacaccatgggcaaaacagtaattttggtgtgaa 44229889  T

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Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 90 - 185
Target Start/End: Complemental strand, 10513254 - 10513159
Alignment:
Q  90 aagagtaatgataagtagacacataatttgtgacacaaaaacaacaccatgggtaaaacagtcattttggtgtgaaatacagggataatttggtaa 185  Q
    ||||| |||||||||||||||||  ||||  |||||||| ||||||||||||| |||||| | ||||||||||||| || |||| || ||||||||    
T  10513254 aagagaaatgataagtagacacactattttggacacaaatacaacaccatgggcaaaacaataattttggtgtgaactagaggggtagtttggtaa 10513159  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 98 - 185
Target Start/End: Original strand, 38495313 - 38495400
Alignment:
Q  98 tgataagtagacacataatttgtgacacaaaaacaacaccatgggtaaaacagtcattttggtgtgaaatacagggataatttggtaa 185  Q
    |||||| |||||||| |||||  |||||| | ||||||||||||| |||||||| ||||||||||||| || |||| |||||||||||    
T  38495313 tgataaatagacacacaattttagacacatatacaacaccatgggcaaaacagtaattttggtgtgaactagaggggtaatttggtaa 38495400  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 165
Target Start/End: Original strand, 17341022 - 17341096
Alignment:
Q  91 agagtaatgataagtagacacataatttgtgacacaaaaacaacaccatgggtaaaacagtcattttggtgtgaa 165  Q
    |||| ||||||||||||||||| |||||  |||||||| ||||||||||||| |||| | | |||||||||||||    
T  17341022 agagaaatgataagtagacacacaattttggacacaaatacaacaccatgggcaaaataataattttggtgtgaa 17341096  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 173
Target Start/End: Original strand, 28385412 - 28385492
Alignment:
Q  93 agtaatgataagtagacacataatttgtgacacaaaaacaacaccatgggtaaaacagtcattttggtgtgaaatacaggg 173  Q
    |||||||||| ||| |||||| ||||   ||||||| || |||||||| ||||||| || |||||||||||||||| ||||    
T  28385412 agtaatgatatgtaaacacatcatttcctacacaaatacgacaccatgtgtaaaactgtaattttggtgtgaaatataggg 28385492  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 29483269 - 29483329
Alignment:
Q  84 aaaataaagagtaatgataagtagacacataatttgtgacacaaaaacaacaccatgggta 144  Q
    |||| ||||||||||||||| |||||||| ||| | ||||||||| || ||||||||||||    
T  29483269 aaaaaaaagagtaatgataactagacacaaaatatttgacacaaatacgacaccatgggta 29483329  T

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