View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20265_low_2 (Length: 618)
Name: NF20265_low_2
Description: NF20265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20265_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 29650723 - 29650442
Alignment:
| Q |
1 |
cattgtttacgaaaatgaattacatctgctctctatcacagtttttcactgcataagtcttccatgtgctagcatttaaaagaaactaaattttagaaaa |
100 |
Q |
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| T |
29650723 |
cattgtttacgaaaatgaattacatctgctctctatcacagtttttaactgcataagtcttccatgtgttagcatttaaaagaaactaaattttagaaaa |
29650624 |
T |
|
| Q |
101 |
tgaaaacataaaatcttttccgaatgcaagcaggagttatttctattgggacccttgccttgctttgaattccttatgttcacatttcgtcaggttttgt |
200 |
Q |
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| T |
29650623 |
tgaaaacataaaatcttttccgaatgcaagcaggagttatttctattgggacccttgccttgctttgaatttcttatgttcacatttcgtcaggttttgt |
29650524 |
T |
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| Q |
201 |
ttcttctcaaaattgaatttgttcataccttaatttattctaatgaactcaaaagagatatatgagattaatagaatatagc |
282 |
Q |
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| T |
29650523 |
ttcttcacaaaattgaatttgttcacaccttaatttattctaatgaactcaaaagagatatctgagattaatagaatatagc |
29650442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 465 - 618
Target Start/End: Complemental strand, 29650290 - 29650137
Alignment:
| Q |
465 |
agaaatagaaagagagagtcaaatgaatttaagaaaaagtggtgttagtttaatgtcaatgtcacataattaagagtatgaaaccctagccatgtgtgtg |
564 |
Q |
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| T |
29650290 |
agaaatagaaagagagagtcaaatgaatttaagaaaaagtggtgttagtttaatgtcaatgtcacataattaagagtatgaaaccctagccatgtgtgtg |
29650191 |
T |
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| Q |
565 |
tgtataaaagagctagtttgcttcacaatcctaacaaacataacacaaaagcac |
618 |
Q |
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| T |
29650190 |
tgtataaaagagctagtttgcttcacaatcctaacaaacataacacaaaagcac |
29650137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 381 - 434
Target Start/End: Complemental strand, 29650343 - 29650290
Alignment:
| Q |
381 |
ggcagtgcttgaatgtgaaccattataacgtgagaaagttgaagttgttaaaca |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29650343 |
ggcagtgcttgaatgtgaaccattataacgtgagaaagttgaagttgttaaaca |
29650290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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