View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20266_low_1 (Length: 529)
Name: NF20266_low_1
Description: NF20266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20266_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 36347132 - 36346808
Alignment:
| Q |
1 |
gacttgatatatgatggagaacctgctaaggctttatgcaacaatgttcaattttcttacacagtacaagctacaccaaactgcggcgcagataaatata |
100 |
Q |
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| T |
36347132 |
gacttgatatatgatggagaacctgctaaggctttatgcaacaatgttcaattttcttacacagtacaagctaccccaaactgcggcgcagataaatata |
36347033 |
T |
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| Q |
101 |
caaattaattaaggactctctacatcatccatcatggaaagactctgtatatactatgatcaataatacaaaaatgcaattagtttatacaatgtaaatt |
200 |
Q |
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| T |
36347032 |
caaattaa----ggactctctacatcatccatcatggaaagactctgtatatactatgatcaataatacaaaaatgcaattagtttatacaatgtaaatt |
36346937 |
T |
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| Q |
201 |
aataataagcatgaatgtaataaactgataggaaccttttattgtcacatatatgtaagcaaaaggtttacctattattgtcaataatacatatattaaa |
300 |
Q |
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| T |
36346936 |
gataataagcatgaatgtaataaactgattggaaccttttattgtcacatatatgtaagcaaaaggtttacctattattgtcaataatacatatattaaa |
36346837 |
T |
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| Q |
301 |
aagtctcacattttattgatgtattacaa |
329 |
Q |
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| T |
36346836 |
aagtctcacattttattgaggtattacaa |
36346808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 350 - 510
Target Start/End: Complemental strand, 36346562 - 36346395
Alignment:
| Q |
350 |
tcttttaaagtatgtttcatgattaatagcaa-------cggtccaataaagaaataaaatgaaagaaagcttggaaactttgttggtcttttttatagc |
442 |
Q |
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| T |
36346562 |
tcttttaaagtatgtttcatgattaatagcaattagcaacggtccaataaagaaataaaatgaaagaaagcttggaaactttgttggtcttttttatagc |
36346463 |
T |
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| Q |
443 |
attgagcaacggcttgtagagcttttgctttgtactgtgttgaaatgaaacttcatgctattatcata |
510 |
Q |
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| T |
36346462 |
attgagcaacggcttgtagagcttttgctttgtactgtgttgaaatgaaacttcatgctattatcata |
36346395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 36354040 - 36353995
Alignment:
| Q |
16 |
ggagaacctgctaaggctttatgcaacaatgttcaattttcttaca |
61 |
Q |
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| T |
36354040 |
ggagaacctgctaaggctttatgcaacaatgttcaattgtcttaca |
36353995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 229 - 306
Target Start/End: Complemental strand, 36353735 - 36353657
Alignment:
| Q |
229 |
taggaaccttttattgtcacatatatgtaagcaaaaggtttacctattattgtcaataataca-tatattaaaaagtct |
306 |
Q |
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| T |
36353735 |
taggaaactcttactgttacatatatgtaaacaaaaggtttacctattaatctcaataatacattttattaaaaagtct |
36353657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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