View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20266_low_2 (Length: 499)

Name: NF20266_low_2
Description: NF20266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20266_low_2
NF20266_low_2
[»] chr7 (3 HSPs)
chr7 (242-499)||(24767593-24767855)
chr7 (84-127)||(30826511-30826554)
chr7 (83-126)||(35722547-35722590)
[»] chr6 (2 HSPs)
chr6 (11-238)||(24076016-24076230)
chr6 (37-67)||(5942532-5942562)
[»] chr3 (4 HSPs)
chr3 (326-463)||(48126935-48127077)
chr3 (249-298)||(48126887-48126936)
chr3 (31-65)||(55070189-55070223)
chr3 (250-315)||(42665646-42665710)
[»] chr2 (2 HSPs)
chr2 (249-376)||(4816330-4816457)
chr2 (79-122)||(44187773-44187816)
[»] chr8 (2 HSPs)
chr8 (249-333)||(42293450-42293534)
chr8 (84-121)||(30405194-30405231)
[»] chr1 (3 HSPs)
chr1 (249-298)||(32085537-32085586)
chr1 (80-127)||(47203772-47203820)
chr1 (80-125)||(27321299-27321344)
[»] chr4 (2 HSPs)
chr4 (242-280)||(1662454-1662492)
chr4 (74-126)||(2653735-2653787)
[»] scaffold0111 (1 HSPs)
scaffold0111 (80-113)||(37407-37440)


Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-107; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 242 - 499
Target Start/End: Complemental strand, 24767855 - 24767593
Alignment:
Q  242 actagcctggtgacccgtgcgtcgcacgggtcttattagccgaaatatagttgctaatcttaatatgaaatgaatactgaaacaaaataaaaaggacatt 341  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||    
T  24767855 actagactggtgacccgtgcgtcgcacgggtcttattagacgaaatatagttgctaatcttaatatgaaatgaattccgaaacaaaataaaaatgacatt 24767756  T
Q  342 taatattaatgtattgtcagatgatagtaatgtattgttaattaaaatgcaacaccagc--acataatgaagttgtacattctcctaaa---tgtgagtt 436  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||   |||| |||    
T  24767755 taatattaatgtattgtaagatgatagtaatatattgttaattaaaatgcaacaccagcatacataatgaagttgtacattctcctaaatattgtgggtt 24767656  T
Q  437 ttttatgctacacgttacgaaatacttcctcatatacgaagttggatgtcatttcagtgtttt 499  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  24767655 ttttatgctacacgttacgaaatacttcctcatagacgacgttggatgtcatttcagtgtttt 24767593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 127
Target Start/End: Complemental strand, 30826554 - 30826511
Alignment:
Q  84 ttattcaccttaaatgtgaatttttagctactaaactacttgat 127  Q
    |||||||| |||||  ||||||||||||||||||||||||||||    
T  30826554 ttattcactttaaagatgaatttttagctactaaactacttgat 30826511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 126
Target Start/End: Complemental strand, 35722590 - 35722547
Alignment:
Q  83 cttattcaccttaaatgtgaatttttagctactaaactacttga 126  Q
    |||||||||| |||| ||||||||||||| ||||||||||||||    
T  35722590 cttattcaccctaaaggtgaatttttagccactaaactacttga 35722547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 24076016 - 24076230
Alignment:
Q  11 atcatcaaacctctttaccaaactctgttgatagagacattgcataatatatacagaagtttgaacatcccacttattcaccttaaatgtgaatttttag 110  Q
    |||||||||||||| |||||| |||||||||||| ||||||||||||||||||  |   ||| ||||||||||||||||| |||||||||||||||||||    
T  24076016 atcatcaaacctctctaccaagctctgttgatagggacattgcataatatataggg---tttaaacatcccacttattcatcttaaatgtgaatttttag 24076112  T
Q  111 ctactaaactacttgatnnnnnnnnnnnnnnnnnntcaaacattttgtgccaaaataatccaatggttaggtaatgtaattttctagttctccttttagt 210  Q
    |||||||||||||||||                  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  24076113 ctactaaactacttgataaaaaaaa----------tcaaaccttttgtgccaaaataatccaatggttaggtaatgtaattttctagttctcctttttgt 24076202  T
Q  211 ttacattgctcgatttcttcttttatat 238  Q
    ||||||||||||||||||||||||||||    
T  24076203 ttacattgctcgatttcttcttttatat 24076230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 67
Target Start/End: Complemental strand, 5942562 - 5942532
Alignment:
Q  37 gttgatagagacattgcataatatatacaga 67  Q
    |||||||||||||||||||||||||||||||    
T  5942562 gttgatagagacattgcataatatatacaga 5942532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 326 - 463
Target Start/End: Original strand, 48126935 - 48127077
Alignment:
Q  326 aaataaaaaggacatttaatattaatgtattgtcagatgatagtaatgtattgttaattaaaatgcaacaccagcacataatgaagt-----tgtacatt 420  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||     ||||||||    
T  48126935 aaataaaaaggacatttaatattaatgtattgtcagataatagaaatgtatcgttaattaaaatgcaacaccagcacataatgaagttgtactgtacatt 48127034  T
Q  421 ctcctaaatgtgagttttttatgctacacgttacgaaatactt 463  Q
    |||||||||||| |||| |||| ||||||||||||||||||||    
T  48127035 ctcctaaatgtgggtttcttatactacacgttacgaaatactt 48127077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 48126887 - 48126936
Alignment:
Q  249 tggtgacccgtgcgtcgcacgggtcttattagccgaaatatagttgctaa 298  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  48126887 tggtgacccgtacgtcgcacgagtcttattagccgaaatatagttgctaa 48126936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 65
Target Start/End: Complemental strand, 55070223 - 55070189
Alignment:
Q  31 aactctgttgatagagacattgcataatatataca 65  Q
    ||||||||||||||| |||||||||||||||||||    
T  55070223 aactctgttgatagatacattgcataatatataca 55070189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 315
Target Start/End: Complemental strand, 42665710 - 42665646
Alignment:
Q  250 ggtgacccgtgcgtcgcacgggtcttattagccgaaatatagttgctaatcttaatatgaaatgaa 315  Q
    ||||||||||||||||||  |  ||||||||||||| ||||||||  |||| ||||||||||||||    
T  42665710 ggtgacccgtgcgtcgcaatga-cttattagccgaattatagttggaaatcataatatgaaatgaa 42665646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 249 - 376
Target Start/End: Complemental strand, 4816457 - 4816330
Alignment:
Q  249 tggtgacccgtgcgtcgcacgggtcttattagccgaaatatagttgctaatcttaatatgaaatgaatactgaaacaaaataaaaaggacatttaatatt 348  Q
    ||||||||||| |||||||| ||||||||||| ||||||||||||||| |||| |||||||||||||||| || ||||||||    ||| |||||||||     
T  4816457 tggtgacccgttcgtcgcacaggtcttattagacgaaatatagttgctgatctaaatatgaaatgaataccgatacaaaatagtttggaaatttaatatc 4816358  T
Q  349 aatgtattgtcagatgatagtaatgtat 376  Q
    ||||||||||||  ||||||||||||||    
T  4816357 aatgtattgtcaattgatagtaatgtat 4816330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 44187773 - 44187816
Alignment:
Q  79 cccacttattcaccttaaatgtgaatttttagctactaaactac 122  Q
    ||||||||||||| ||||| ||||||||||||| ||||||||||    
T  44187773 cccacttattcactttaaaagtgaatttttagccactaaactac 44187816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 249 - 333
Target Start/End: Complemental strand, 42293534 - 42293450
Alignment:
Q  249 tggtgacccgtgcgtcgcacgggtcttattagccgaaatatagttgctaatcttaatatgaaatgaatactgaaacaaaataaaa 333  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| |||||| |||||| |||||||    
T  42293534 tggtgacccgtgcgccgcacgggtcttatgagccgaaatatagttgctaatctcaatatgaaaagaataccgaaacacaataaaa 42293450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 30405194 - 30405231
Alignment:
Q  84 ttattcaccttaaatgtgaatttttagctactaaacta 121  Q
    |||||||||||||||||||||||||||| | |||||||    
T  30405194 ttattcaccttaaatgtgaatttttagccattaaacta 30405231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 32085586 - 32085537
Alignment:
Q  249 tggtgacccgtgcgtcgcacgggtcttattagccgaaatatagttgctaa 298  Q
    ||||||||||||||| ||||| ||||||||||||||||||| ||||||||    
T  32085586 tggtgacccgtgcgttgcacgcgtcttattagccgaaatattgttgctaa 32085537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 127
Target Start/End: Complemental strand, 47203820 - 47203772
Alignment:
Q  80 ccacttattcacctt-aaatgtgaatttttagctactaaactacttgat 127  Q
    ||||||||||||||| ||||||||||||||| | |||||||||||||||    
T  47203820 ccacttattcacctttaaatgtgaatttttaaccactaaactacttgat 47203772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 27321299 - 27321344
Alignment:
Q  80 ccacttattcaccttaaatgtgaatttttagctactaaactacttg 125  Q
    |||||||||||  ||||| ||||||||||||| |||||||||||||    
T  27321299 ccacttattcattttaaaggtgaatttttagccactaaactacttg 27321344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 280
Target Start/End: Original strand, 1662454 - 1662492
Alignment:
Q  242 actagcctggtgacccgtgcgtcgcacgggtcttattag 280  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  1662454 actagactggtgacccgtgcgtcgcacgggtcttattag 1662492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 2653787 - 2653735
Alignment:
Q  74 aacatcccacttattcaccttaaatgtgaatttttagctactaaactacttga 126  Q
    ||||||||||||||||||||||||  ||||||| || |||||| |||||||||    
T  2653787 aacatcccacttattcaccttaaagatgaatttctaactactacactacttga 2653735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 37407 - 37440
Alignment:
Q  80 ccacttattcaccttaaatgtgaatttttagcta 113  Q
    ||||||||||||||||||||||||||||||||||    
T  37407 ccacttattcaccttaaatgtgaatttttagcta 37440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University