View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20266_low_3 (Length: 395)
Name: NF20266_low_3
Description: NF20266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20266_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 377
Target Start/End: Original strand, 5214623 - 5214979
Alignment:
| Q |
12 |
atgaacaatgattacattaaacatatgctattttgtacgtatttgaaatattaagtccacagaagaggaaattaaaattctcaaatttgttcaaaatctt |
111 |
Q |
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| T |
5214623 |
atgaacaatgattacattaaacatatgctattttgtacgtatttgaaatattaagtccacagaagaggaaattaaaattctcaaatttgttcaaaatctt |
5214722 |
T |
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| Q |
112 |
ggacgttgtatttccaacaacaaactaaaacaaggttacacaatcacaataacatgttcgttttcctttaactagaaagattagcatgcttttatgttac |
211 |
Q |
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| T |
5214723 |
ggacgttgtatttccaacaacaaactaaaacaaggttacacaatcacaataacatgttcgttttcctttaactagaaagattagca----gttatgttac |
5214818 |
T |
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| Q |
212 |
atctacgtgtcgataaaaataaaatacaaataccaacatagtataacacaagtggtacatatttgagnnnnnnnaccatttggccatgaagttcaattct |
311 |
Q |
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| T |
5214819 |
atctacgtgtcgataaaaataaaatacaaatgccaacatagtataacacaagt-ttacatatttgagtttttttaccatttagccatgaagttcaattct |
5214917 |
T |
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| Q |
312 |
ttgatcggtgcgtgcgtaaggaaaaacatatgtcagaagaagttaaccccttaaataaaccttagg |
377 |
Q |
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| T |
5214918 |
ttgatcg----gtgcgtaaggtaaaacatatgtcagaagaagttaaccccttaaatagaccttagg |
5214979 |
T |
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