View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20266_low_5 (Length: 272)
Name: NF20266_low_5
Description: NF20266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20266_low_5 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 1865664 - 1865391
Alignment:
| Q |
1 |
ccaactgattccttgttgtagacccatgtttgtattttgagtattataaggcacacttgaaatatctccatgaaaagacatatcaataataccagatgat |
100 |
Q |
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| T |
1865664 |
ccaactgattccttgttgtagactcatgtttgtattttgagtattataaggcacacttgaaatatctccatgaaaagacatatcaataataccagatgat |
1865565 |
T |
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| Q |
101 |
gacccaccattattaaacgcgttagataaatttgaatccacaccatgtagaatagcatctccgatatttggattaacctctacagcttttccatcagtgc |
200 |
Q |
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| T |
1865564 |
gacccaccattattaaacgcgttagataaatttgaatccacaccatgtagaatagcatctccgatatttggattaacctctacagcttttccatcaatgc |
1865465 |
T |
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| Q |
201 |
caaacatgagaggagaagaacttgaatatccaggttttgatatgtttg--ccccaactgattccttgttgtaga |
272 |
Q |
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| T |
1865464 |
caaacatgagaggagaagaacttgaatatccaggttttgatatgtttgcccccccactgattccttgttgtaga |
1865391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 4 - 154
Target Start/End: Complemental strand, 1865409 - 1865259
Alignment:
| Q |
4 |
actgattccttgttgtagacccatgtttgtattttgagtattataaggc---acacttgaaatatctccatgaaaagacatatcaataataccagatgat |
100 |
Q |
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| T |
1865409 |
actgattccttgttgtagactcatgtttgtattttgagtattataagtcgacacatttgaaatatctccatgaaaagacatatcaataataccggatgat |
1865310 |
T |
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| Q |
101 |
gacccaccattattaaacgcgttagataaatttgaatccacaccatgtagaata |
154 |
Q |
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| T |
1865309 |
gatccaccattttta---gtattagataaacttgaatctacaccatgtagaata |
1865259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 155 - 272
Target Start/End: Complemental strand, 1865762 - 1865643
Alignment:
| Q |
155 |
gcatctccgatatttggattaacctctacagcttttccatcagtgccaaacatgagaggagaagaacttgaatatccaggttttgatatgtttg--cccc |
252 |
Q |
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|||||||||||||||||||||||| | || |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
1865762 |
gcatctccgatatttggattaacccccgcaacttttccatcagcaccaaacatgagaggagaagaacttgaatatctaggttttgatatgtttgcccccc |
1865663 |
T |
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| Q |
253 |
aactgattccttgttgtaga |
272 |
Q |
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| T |
1865662 |
aactgattccttgttgtaga |
1865643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 130
Target Start/End: Original strand, 51575275 - 51575399
Alignment:
| Q |
6 |
tgattccttgttgtagacccatgtttgtattttgagtattataaggcacacttgaaatatctccatgaaaagacatatcaataataccagatgatgaccc |
105 |
Q |
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||||| |||| |||||||||||||||| || ||||||||||||||| ||||||||||| ||| || ||||| ||||| |||||| ||||||| || |
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| T |
51575275 |
tgatttcttggtgtagacccatgtttgagttccgagtattataaggcatgcttgaaatatcaccacgaggagacacatcaaccataccaaatgatgaacc |
51575374 |
T |
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| Q |
106 |
accattattaaacgcgttagataaa |
130 |
Q |
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||| ||||| || ||||||||||| |
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| T |
51575375 |
accgctattagacacgttagataaa |
51575399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 35440717 - 35440763
Alignment:
| Q |
200 |
ccaaacatgagaggagaagaacttgaatatccaggttttgatatgtt |
246 |
Q |
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| T |
35440717 |
ccaaacatgtgaggagaataacttgaatatccaggttttgatgtgtt |
35440763 |
T |
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