View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20267_low_1 (Length: 392)
Name: NF20267_low_1
Description: NF20267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20267_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 44 - 376
Target Start/End: Original strand, 41278050 - 41278383
Alignment:
| Q |
44 |
aaagaagaaaatagaattttctgctttggtgtacttgacacggaaaagaggaagcacacaattgatggatgacgtgaagattccacttaaatgtcaaatg |
143 |
Q |
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| T |
41278050 |
aaagaagaaaatagaattttatgctttggtgtacttgacacggaaaagaggaagcacacgattgatggatgacgtgaagattccacttaaatgtcaaatg |
41278149 |
T |
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| Q |
144 |
tttgggaaataaagatttctagaaaatgttttcctataaatagtatatatttctgtacgaattttcagtg-ttgatgggcaagttcaacttttgaactac |
242 |
Q |
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| T |
41278150 |
tttggggaataaagatttctagaaaatgttttcctataaatagtatatatttctgtacgaattttcagtgtttgatgggcaagttcaacttttgaactac |
41278249 |
T |
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| Q |
243 |
actcattttgtctttccgccacgaaatcacctttggatgattctttacttagaatagcatttttgtactggatggcaccaacatatttgtccaatatgtt |
342 |
Q |
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| T |
41278250 |
actcattttgtctttccgccacgaaatcacctttggataattctttacttagaatagcattttagtactggatggcaccaacatatttgtccaatatgtt |
41278349 |
T |
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| Q |
343 |
gttaaagggattgaaaatttcacaacttgtactt |
376 |
Q |
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| T |
41278350 |
gttaaagggattgaaaatttcacaacttgtactt |
41278383 |
T |
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