View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20267_low_4 (Length: 202)
Name: NF20267_low_4
Description: NF20267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20267_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 6e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 23 - 191
Target Start/End: Original strand, 46245388 - 46245555
Alignment:
| Q |
23 |
aatctaccacctcttgattgatctctctgttgcagacgtggcaattctttcaacacctctaatcttacatctgagacattttccttacctaaagaacaaa |
122 |
Q |
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| T |
46245388 |
aatctaccacctcttgattgatctctctgttgcagacgtggcaattctttcaacacctctaatcttacatctgagacattttccttacctaaagaacaaa |
46245487 |
T |
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| Q |
123 |
tatgactaagttaaaatatgaagaaaataaatnnnnnnntgtctaactatactctttaaaagtgatgat |
191 |
Q |
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| T |
46245488 |
tatgactgagttaaaatatgaagaaaataaat-aaaaaatgtctaactatactctttaaaagtgatgat |
46245555 |
T |
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Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 46255076 - 46255180
Alignment:
| Q |
23 |
aatctaccacctcttgattgatctctctgttgcagacgtggcaattctttcaacacctctaatcttacatctgagacattttccttacctaaagaacaaa |
122 |
Q |
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| T |
46255076 |
aatctaacccctcttgattgatctctctgttgcagacgcggcaattctttcaacacctttaatcttacatatgaagcatcttccttacctgaagaacaaa |
46255175 |
T |
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| Q |
123 |
tatga |
127 |
Q |
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||||| |
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| T |
46255176 |
tatga |
46255180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 12370262 - 12370350
Alignment:
| Q |
23 |
aatctaccacctcttgattgatctctctgttgcagacgtggcaattctttcaacacctctaatcttacatctgagacattttccttacc |
111 |
Q |
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| T |
12370262 |
aatctaccccctctcaattgatctctcggttgcaaacgcgacaattcttttaacatctctaatcttacatcagaggcattttccttacc |
12370350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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