View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20268_high_1 (Length: 491)
Name: NF20268_high_1
Description: NF20268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20268_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 32046467 - 32046132
Alignment:
| Q |
18 |
atgaatgggattattctcttctgacctttactaaaagttggtgaaaaccatgcatgctaaaatacttgtactatgtatataaaaggattattctctaatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32046467 |
atgaatgggattattctcttctgacctttactaaaagttggtgaaaaccatgcatgctaaaatacttgtact--gtatataaaaggattattctctaatc |
32046370 |
T |
|
| Q |
118 |
tctactcacctgagatttgctgcatactttgttgaatcgctgaatatcatgtatcctaaaatactttatttaccttttgtcaaatatgcatgagcatgaa |
217 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32046369 |
tcttctcacctgagatttgctgcatactttgttgaatcgctgaatatcatgtatcctaaaatactttatttactttttgtcaaatatgcatgagcatgaa |
32046270 |
T |
|
| Q |
218 |
cannnnnnnggaaggcacatggcatacatgcaggtacagttaaaacgtgattcgatgcaactcgtgtgcagcactaaaa--tcgaatgatttccctcgta |
315 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32046269 |
catttttctggaaggcacatggcatacatgcaggtacagttaaaacgtgattcgatgcaactcgtgtgcagcactaaaatctcgaatgatttccctcgta |
32046170 |
T |
|
| Q |
316 |
gaatctcgggagaaagagattcttagagcagttatata |
353 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32046169 |
gaatctcgggagaaagagattcttagagtagttatata |
32046132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 352 - 452
Target Start/End: Complemental strand, 32045834 - 32045734
Alignment:
| Q |
352 |
tatgttttggacgatagtttactaaagcctcatcataaattattgattattactgtggaaattcaggaagatataaaagaaaattgtatgctattgtgtg |
451 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32045834 |
tatgttttggacgatagtttactaaaacctcgtcataaattattgattattactgtggaaattcaggaagatataaaagaaaattgtatgctattgtgtg |
32045735 |
T |
|
| Q |
452 |
t |
452 |
Q |
| |
|
| |
|
|
| T |
32045734 |
t |
32045734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University