View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20268_high_9 (Length: 202)
Name: NF20268_high_9
Description: NF20268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20268_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 34898728 - 34898548
Alignment:
| Q |
1 |
aaaaactccaatttctagcttcaagtagaatcgattctcaccacttatttgctaacttactgtttcttcgtctaggtgatctctggtcaggttccgaagg |
100 |
Q |
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| T |
34898728 |
aaaaactctaatttctagcttcaagtagaatcgattctcaccacttatttgctaatttactgtttcttcgtctaggtgatctctggtcaggttccgaagg |
34898629 |
T |
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| Q |
101 |
gggtgttattaagatttggccttgggaatcaattgaaaaatctctctctatgtctccagaagaaaagcacatggcagcctt |
181 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34898628 |
gggtgttattaagatttggccttgggaatcaattgaaaaatctctctctatgtctccagaagaaaagcacatggcagcctt |
34898548 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37522962 - 37522998
Alignment:
| Q |
1 |
aaaaactccaatttctagcttcaagtagaatcgattc |
37 |
Q |
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||||||||||| |||||||||||||||||||| |||| |
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| T |
37522962 |
aaaaactccaacttctagcttcaagtagaatcaattc |
37522998 |
T |
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