View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20268_low_10 (Length: 226)
Name: NF20268_low_10
Description: NF20268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20268_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 7117673 - 7117887
Alignment:
| Q |
3 |
tatgtgttttaaagctataaattctaattttaagtagaatcaattatactcgacagtaaccaaatatgtcaagttgattaagcacaattaaacctaattc |
102 |
Q |
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| T |
7117673 |
tatgtgttttaaaactataaattctaattttaaatagaatcaattatactcgacagtaactaaacatgtcaagtcgattaagcacaattaaacctaatcc |
7117772 |
T |
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| Q |
103 |
cgttggatatattaatatacaaacaagttaaatac-tactactagcttacttacacaaacaaattagtgttactgtgaaatttttggtggattaatacat |
201 |
Q |
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| T |
7117773 |
tgttggatatattaatatacaaacaagttaaatacttactactagcttacttacacaaacaaattaatgttagtgtgaaacttttggtggattaatacat |
7117872 |
T |
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| Q |
202 |
catttgatcattctt |
216 |
Q |
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| T |
7117873 |
catttgatcattctt |
7117887 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 1048749 - 1048716
Alignment:
| Q |
13 |
aaagctataaattctaattttaagtagaatcaat |
46 |
Q |
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| T |
1048749 |
aaagctataaattctaactttaagtagaatcaat |
1048716 |
T |
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