View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20268_low_11 (Length: 210)

Name: NF20268_low_11
Description: NF20268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20268_low_11
NF20268_low_11
[»] chr5 (20 HSPs)
chr5 (76-200)||(25012705-25012829)
chr5 (36-77)||(3557422-3557463)
chr5 (36-77)||(8198181-8198222)
chr5 (36-77)||(8735494-8735535)
chr5 (36-77)||(12724479-12724520)
chr5 (36-77)||(12785962-12786003)
chr5 (36-77)||(16512887-16512928)
chr5 (36-77)||(18809770-18809811)
chr5 (36-77)||(38678760-38678801)
chr5 (37-77)||(25976433-25976473)
chr5 (37-77)||(27115104-27115144)
chr5 (36-72)||(37013573-37013609)
chr5 (38-77)||(8298547-8298586)
chr5 (36-70)||(26279855-26279889)
chr5 (36-77)||(11719237-11719278)
chr5 (36-77)||(13821383-13821424)
chr5 (36-77)||(17504427-17504468)
chr5 (36-77)||(37029594-37029635)
chr5 (37-77)||(37884220-37884260)
chr5 (36-72)||(9714600-9714636)
[»] chr7 (13 HSPs)
chr7 (99-165)||(12417169-12417235)
chr7 (36-77)||(33951734-33951775)
chr7 (36-77)||(36311395-36311436)
chr7 (36-77)||(43458944-43458985)
chr7 (36-77)||(44866838-44866879)
chr7 (36-77)||(46255656-46255697)
chr7 (37-77)||(25528405-25528445)
chr7 (38-77)||(35795258-35795297)
chr7 (36-77)||(8166525-8166566)
chr7 (36-71)||(34847126-34847161)
chr7 (42-77)||(38001033-38001068)
chr7 (42-71)||(43745003-43745032)
chr7 (45-77)||(7253006-7253038)
[»] chr4 (33 HSPs)
chr4 (36-77)||(45462987-45463028)
chr4 (36-77)||(167826-167867)
chr4 (36-77)||(1603582-1603623)
chr4 (36-77)||(6964251-6964292)
chr4 (36-77)||(15542118-15542159)
chr4 (36-77)||(31093898-31093939)
chr4 (36-77)||(35319175-35319216)
chr4 (36-77)||(45229868-45229909)
chr4 (36-77)||(49375115-49375156)
chr4 (36-77)||(51539413-51539454)
chr4 (36-77)||(52502207-52502248)
chr4 (37-77)||(2013026-2013066)
chr4 (37-77)||(9035396-9035436)
chr4 (36-72)||(16452749-16452785)
chr4 (36-72)||(33281863-33281899)
chr4 (36-71)||(40728828-40728863)
chr4 (38-77)||(44109380-44109419)
chr4 (38-77)||(45657221-45657260)
chr4 (36-71)||(45925390-45925425)
chr4 (38-77)||(53271652-53271691)
chr4 (40-77)||(4189184-4189221)
chr4 (36-77)||(28780083-28780124)
chr4 (36-77)||(30004356-30004397)
chr4 (40-77)||(38217581-38217618)
chr4 (36-72)||(52416234-52416270)
chr4 (36-71)||(4048935-4048970)
chr4 (42-77)||(4353395-4353430)
chr4 (42-77)||(38988395-38988430)
chr4 (42-77)||(47984228-47984263)
chr4 (38-72)||(18559693-18559727)
chr4 (36-77)||(35159519-35159560)
chr4 (36-72)||(16024665-16024701)
chr4 (36-72)||(55137446-55137482)
[»] chr1 (23 HSPs)
chr1 (36-77)||(41724278-41724319)
chr1 (36-75)||(52631643-52631682)
chr1 (36-77)||(12699849-12699890)
chr1 (36-77)||(14586633-14586674)
chr1 (36-77)||(22859470-22859511)
chr1 (36-77)||(33802130-33802171)
chr1 (36-77)||(38861491-38861532)
chr1 (36-77)||(41899583-41899624)
chr1 (36-77)||(48963631-48963672)
chr1 (36-77)||(49852526-49852567)
chr1 (37-72)||(44497284-44497319)
chr1 (36-77)||(3516890-3516931)
chr1 (36-77)||(41087216-41087257)
chr1 (36-77)||(41091984-41092025)
chr1 (36-77)||(44754704-44754745)
chr1 (36-77)||(50261293-50261334)
chr1 (40-72)||(42881912-42881944)
chr1 (42-77)||(30233562-30233597)
chr1 (42-77)||(39600528-39600563)
chr1 (42-76)||(29946059-29946093)
chr1 (40-77)||(29962200-29962237)
chr1 (36-72)||(12529174-12529210)
chr1 (36-72)||(23983323-23983359)
[»] scaffold0108 (1 HSPs)
scaffold0108 (117-200)||(19365-19448)
[»] chr8 (23 HSPs)
chr8 (36-77)||(11076985-11077026)
chr8 (36-77)||(13545551-13545592)
chr8 (36-77)||(13678881-13678922)
chr8 (36-77)||(28249543-28249584)
chr8 (36-77)||(31700325-31700366)
chr8 (36-77)||(35683313-35683354)
chr8 (36-77)||(39317915-39317956)
chr8 (37-77)||(39259599-39259639)
chr8 (39-72)||(585697-585730)
chr8 (39-72)||(628193-628226)
chr8 (36-77)||(23143424-23143465)
chr8 (36-77)||(37099122-37099163)
chr8 (40-77)||(40104546-40104583)
chr8 (36-77)||(43097823-43097864)
chr8 (36-71)||(32338630-32338665)
chr8 (42-77)||(42191563-42191598)
chr8 (40-77)||(225472-225509)
chr8 (40-77)||(701885-701922)
chr8 (40-77)||(739095-739132)
chr8 (40-77)||(862990-863027)
chr8 (40-77)||(6348118-6348155)
chr8 (36-77)||(8239284-8239325)
chr8 (36-77)||(38224716-38224757)
[»] chr6 (11 HSPs)
chr6 (36-77)||(11975771-11975812)
chr6 (36-77)||(16396142-16396183)
chr6 (36-77)||(31722200-31722241)
chr6 (36-77)||(34540728-34540769)
chr6 (36-70)||(439852-439886)
chr6 (36-77)||(9304297-9304338)
chr6 (42-77)||(18574736-18574771)
chr6 (42-77)||(18584617-18584652)
chr6 (36-71)||(31272055-31272090)
chr6 (36-71)||(31319319-31319354)
chr6 (39-77)||(304559-304597)
[»] chr3 (17 HSPs)
chr3 (36-77)||(228177-228218)
chr3 (36-77)||(39353907-39353948)
chr3 (36-77)||(39587370-39587411)
chr3 (36-77)||(47013059-47013100)
chr3 (36-77)||(47647716-47647757)
chr3 (36-77)||(49165400-49165441)
chr3 (36-80)||(41193054-41193098)
chr3 (36-77)||(26501495-26501536)
chr3 (36-77)||(53816734-53816775)
chr3 (36-68)||(6937225-6937257)
chr3 (45-77)||(44205152-44205184)
chr3 (42-77)||(8484133-8484168)
chr3 (42-77)||(9128443-9128478)
chr3 (42-77)||(9136550-9136585)
chr3 (42-77)||(21448349-21448384)
chr3 (36-77)||(36402119-36402160)
chr3 (45-77)||(30390511-30390543)
[»] chr2 (15 HSPs)
chr2 (36-77)||(6404914-6404955)
chr2 (36-77)||(13279475-13279516)
chr2 (36-77)||(38209131-38209172)
chr2 (36-77)||(45235025-45235066)
chr2 (36-72)||(1115903-1115939)
chr2 (37-77)||(31993375-31993415)
chr2 (36-72)||(44760833-44760869)
chr2 (36-71)||(30490071-30490106)
chr2 (36-77)||(1209212-1209253)
chr2 (36-77)||(17136999-17137040)
chr2 (36-77)||(45117808-45117849)
chr2 (36-72)||(38702909-38702945)
chr2 (42-77)||(5462091-5462126)
chr2 (36-71)||(15912510-15912545)
chr2 (42-77)||(43334476-43334511)
[»] scaffold0209 (1 HSPs)
scaffold0209 (39-72)||(14458-14491)
[»] scaffold0121 (1 HSPs)
scaffold0121 (36-77)||(46727-46768)


Alignment Details
Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 76 - 200
Target Start/End: Original strand, 25012705 - 25012829
Alignment:
Q  76 aagaaaagatgaaagtacgtaaatgcaagcatcagataattttgaacaataaatgattcatttaaatcaattaaatttcaatgaaatttatttgtctttg 175  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  25012705 aagaaaagatgaaagtaggtaaatgcaagcatctgataattttgaacaataaatgattcatttaaatcaattaaatttcaatgaaatttatttgtctttt 25012804  T
Q  176 tctccatgtgtgatccctttgcttc 200  Q
    |||| ||||||||||| ||||||||    
T  25012805 tctctatgtgtgatccatttgcttc 25012829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 3557422 - 3557463
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  3557422 ggagattagaaatagatttaggatcttatgtaataagcttaa 3557463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 8198181 - 8198222
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  8198181 ggagattagaaatagatttaggatcttatgtaataagcttaa 8198222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 8735494 - 8735535
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  8735494 ggagattagaaatagatttaggatcttatgtaataagcttaa 8735535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 12724479 - 12724520
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  12724479 ggagattagaaatagatttaggatcttatgtaataagcttaa 12724520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 12785962 - 12786003
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  12785962 ggagattagaaatagatttaggatcttatgtaataagcttaa 12786003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 16512928 - 16512887
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  16512928 ggagattagaaatagatttaggatcttatgtaataagcttaa 16512887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 18809770 - 18809811
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  18809770 ggagattagaaatagatttaggatcttatgtaataagcttaa 18809811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 38678801 - 38678760
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  38678801 ggagattagaaatagatttaggatcttatgtaataagcttaa 38678760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 25976473 - 25976433
Alignment:
Q  37 gagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  25976473 gagattagaaatagatttaggatcttatgtaataagcttaa 25976433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 27115104 - 27115144
Alignment:
Q  37 gagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  27115104 gagattagaaatagatttatgatcttatgtaataagtttaa 27115144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 37013573 - 37013609
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataag 72  Q
    |||||||||||||||||||||||||||||||||||||    
T  37013573 ggagattagaaatagatttaggatcttatgtaataag 37013609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 8298586 - 8298547
Alignment:
Q  38 agattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  8298586 agattagaaatagatttaggatcttatgtaataagcttaa 8298547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 26279855 - 26279889
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaata 70  Q
    |||||||||||||||||||||||||||||||||||    
T  26279855 ggagattagaaatagatttaggatcttatgtaata 26279889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 11719278 - 11719237
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    |||||||||||||| ||||| |||||||||||||||||||||    
T  11719278 ggagattagaaatatatttaagatcttatgtaataagtttaa 11719237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 13821424 - 13821383
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    |||||||||||||||||||| |||||||||||||||| ||||    
T  13821424 ggagattagaaatagatttaagatcttatgtaataagcttaa 13821383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 17504427 - 17504468
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    |||||||||||||||||||| |||||||| ||||||||||||    
T  17504427 ggagattagaaatagatttatgatcttatataataagtttaa 17504468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 37029635 - 37029594
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    |||||||||||||||||| |||||||||||||||||| ||||    
T  37029635 ggagattagaaatagattaaggatcttatgtaataagcttaa 37029594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 37884220 - 37884260
Alignment:
Q  37 gagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||| |||||||| ||||    
T  37884220 gagattagaaatagatttaggatcttacgtaataagcttaa 37884260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 9714636 - 9714600
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataag 72  Q
    |||||||| |||||||||||||||||| |||||||||    
T  9714636 ggagattataaatagatttaggatcttttgtaataag 9714600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 165
Target Start/End: Complemental strand, 12417235 - 12417169
Alignment:
Q  99 tgcaagcatcagataattttgaacaataaatgattcatttaaatcaattaaatttcaatgaaattta 165  Q
    |||||||||  |||||||||||| || |||||||||||| ||||||| |||||||||||||||||||    
T  12417235 tgcaagcatttgataattttgaataagaaatgattcattgaaatcaaataaatttcaatgaaattta 12417169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 33951734 - 33951775
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  33951734 ggagattagaaatagatttaggatcttatgtaataagcttaa 33951775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 36311436 - 36311395
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  36311436 ggagattagaaatagatttaggatcttatgtaataagcttaa 36311395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 43458944 - 43458985
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  43458944 ggagattagaaatagatttaggatcttatgtagtaagtttaa 43458985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 44866838 - 44866879
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  44866838 ggagattagaaatagatttaggatcttatgtaataagcttaa 44866879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 46255656 - 46255697
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  46255656 ggagattagaaatagatttaggatcttatgtaataagcttaa 46255697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 25528445 - 25528405
Alignment:
Q  37 gagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  25528445 gagattagaaatagattgaggatcttatgtaataagtttaa 25528405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 77
Target Start/End: Original strand, 35795258 - 35795297
Alignment:
Q  38 agattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  35795258 agattagaaatagatttaggatcttatgtaataagcttaa 35795297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 8166525 - 8166566
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    |||||||||||||||||||||| |||||||||||||| ||||    
T  8166525 ggagattagaaatagatttaggttcttatgtaataagcttaa 8166566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 71
Target Start/End: Complemental strand, 34847161 - 34847126
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataa 71  Q
    |||||||||||||| |||||||||||||||||||||    
T  34847161 ggagattagaaataaatttaggatcttatgtaataa 34847126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 38001033 - 38001068
Alignment:
Q  42 tagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||| ||||    
T  38001033 tagaaatagatttaggatcttatgtaataagcttaa 38001068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 71
Target Start/End: Complemental strand, 43745032 - 43745003
Alignment:
Q  42 tagaaatagatttaggatcttatgtaataa 71  Q
    ||||||||||||||||||||||||||||||    
T  43745032 tagaaatagatttaggatcttatgtaataa 43745003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 7253038 - 7253006
Alignment:
Q  45 aaatagatttaggatcttatgtaataagtttaa 77  Q
    |||||||||||||||||||||||||||| ||||    
T  7253038 aaatagatttaggatcttatgtaataagcttaa 7253006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 45462987 - 45463028
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  45462987 ggagattagaaatagatttaggatcttatgtaataagtttaa 45463028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 167867 - 167826
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  167867 ggagattagaaatagatttaggatcttatgtaataagcttaa 167826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 1603582 - 1603623
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  1603582 ggagattagaaatagatttaggatcttatgtaataagcttaa 1603623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 6964251 - 6964292
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  6964251 ggagattagaaatagatttaggatcttatgtaataagcttaa 6964292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 15542159 - 15542118
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  15542159 ggagattagaaatagatttaggatcttatgtaataagcttaa 15542118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 31093898 - 31093939
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  31093898 ggagattagaaatagatttaggatcttatgtaataagcttaa 31093939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 35319216 - 35319175
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  35319216 ggagattagaaatagatttaggatcttatgtaataagcttaa 35319175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 45229868 - 45229909
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  45229868 ggagattagaaatagatttaggatcttatgtaataagcttaa 45229909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 49375115 - 49375156
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  49375115 ggagattagaaatagatttaggatcttatgtaataagcttaa 49375156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 51539413 - 51539454
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  51539413 ggagattagaaatagatttaggatcttatgtaataagcttaa 51539454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 52502207 - 52502248
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  52502207 ggagattagaaatagatttaggatcttatgtaataagcttaa 52502248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 2013066 - 2013026
Alignment:
Q  37 gagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  2013066 gagattagaaatagatttaggatcttatgtaataagcttaa 2013026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 9035436 - 9035396
Alignment:
Q  37 gagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  9035436 gagattagaaatagatttaggatcttatgtaataagcttaa 9035396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 16452749 - 16452785
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataag 72  Q
    |||||||||||||||||||||||||||||||||||||    
T  16452749 ggagattagaaatagatttaggatcttatgtaataag 16452785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 33281863 - 33281899
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataag 72  Q
    |||||||||||||||||||||||||||||||||||||    
T  33281863 ggagattagaaatagatttaggatcttatgtaataag 33281899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 71
Target Start/End: Original strand, 40728828 - 40728863
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataa 71  Q
    ||||||||||||||||||||||||||||||||||||    
T  40728828 ggagattagaaatagatttaggatcttatgtaataa 40728863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 77
Target Start/End: Original strand, 44109380 - 44109419
Alignment:
Q  38 agattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  44109380 agattagaaatagatttaggatcttatgtaataagcttaa 44109419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 45657260 - 45657221
Alignment:
Q  38 agattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  45657260 agattagaaatagatttaggatcttatgtaataagcttaa 45657221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 71
Target Start/End: Original strand, 45925390 - 45925425
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataa 71  Q
    ||||||||||||||||||||||||||||||||||||    
T  45925390 ggagattagaaatagatttaggatcttatgtaataa 45925425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 77
Target Start/End: Original strand, 53271652 - 53271691
Alignment:
Q  38 agattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  53271652 agattagaaatagatttaggatcttatgtaataagcttaa 53271691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 4189221 - 4189184
Alignment:
Q  40 attagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  4189221 attagaaatagatttaggatcttatgtaataagcttaa 4189184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 28780124 - 28780083
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||| ||||| ||||    
T  28780124 ggagattagaaatagatttaggatcttatgtgataagcttaa 28780083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 30004356 - 30004397
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    |||||||| |||||||||||||||||||||||||||| ||||    
T  30004356 ggagattataaatagatttaggatcttatgtaataagcttaa 30004397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 38217618 - 38217581
Alignment:
Q  40 attagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  38217618 attagaaatagatttaggatcttatgtaataagcttaa 38217581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 52416270 - 52416234
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataag 72  Q
    ||||||||||||||||||||| |||||||||||||||    
T  52416270 ggagattagaaatagatttagaatcttatgtaataag 52416234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 71
Target Start/End: Original strand, 4048935 - 4048970
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataa 71  Q
    |||||||||||||| |||||||||||||||||||||    
T  4048935 ggagattagaaatatatttaggatcttatgtaataa 4048970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 4353395 - 4353430
Alignment:
Q  42 tagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||| ||||    
T  4353395 tagaaatagatttaggatcttatgtaataagcttaa 4353430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 38988430 - 38988395
Alignment:
Q  42 tagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||| ||||    
T  38988430 tagaaatagatttaggatcttatgtaataagcttaa 38988395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 47984263 - 47984228
Alignment:
Q  42 tagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||| ||||    
T  47984263 tagaaatagatttaggatcttatgtaataagcttaa 47984228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 18559727 - 18559693
Alignment:
Q  38 agattagaaatagatttaggatcttatgtaataag 72  Q
    |||||||||||||||||||||||||||||| ||||    
T  18559727 agattagaaatagatttaggatcttatgtactaag 18559693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 35159519 - 35159560
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||  ||||||||||||||| ||||    
T  35159519 ggagattagaaatagatttaacatcttatgtaataagcttaa 35159560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 16024665 - 16024701
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataag 72  Q
    |||||||| | ||||||||||||||||||||||||||    
T  16024665 ggagattatagatagatttaggatcttatgtaataag 16024701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 55137446 - 55137482
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataag 72  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  55137446 ggagattagaaatagatttaggattttatgtagtaag 55137482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 41724278 - 41724319
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  41724278 ggagattagaaatagatttaggatcttatgtaataagtttaa 41724319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 52631682 - 52631643
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagttt 75  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  52631682 ggagattagaaatagatttaggatcttatgtaataagttt 52631643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 12699890 - 12699849
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  12699890 ggagattagaaatagatttaggatcttatgtaataagcttaa 12699849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 14586674 - 14586633
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  14586674 ggagattagaaatagatttaggatcttatgcaataagtttaa 14586633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 22859470 - 22859511
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  22859470 ggagattagaaatagatttaggatcttatgtaataagcttaa 22859511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 33802130 - 33802171
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  33802130 ggagattagaaatagatttaggatcttatgtaataagcttaa 33802171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 38861491 - 38861532
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  38861491 ggagattagaaatagatttaggatcttatgtaataagcttaa 38861532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 41899624 - 41899583
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  41899624 ggagattagaaatagatttaggatcttatgtaataagcttaa 41899583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 48963672 - 48963631
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  48963672 ggagattagaaatagatttaggatcttatgtaataagcttaa 48963631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 49852526 - 49852567
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  49852526 ggagattagaaatagatttaggatcttatgtaataagcttaa 49852567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 44497284 - 44497319
Alignment:
Q  37 gagattagaaatagatttaggatcttatgtaataag 72  Q
    ||||||||||||||||||||||||||||||||||||    
T  44497284 gagattagaaatagatttaggatcttatgtaataag 44497319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 3516931 - 3516890
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||| ||||||||||||||| ||||    
T  3516931 ggagattagaaatagatttagaatcttatgtaataagcttaa 3516890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 41087216 - 41087257
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||| ||||||||||||||| ||||    
T  41087216 ggagattagaaatagatttagaatcttatgtaataagcttaa 41087257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 41091984 - 41092025
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||| ||||||||||||||| ||||    
T  41091984 ggagattagaaatagatttagaatcttatgtaataagcttaa 41092025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 44754745 - 44754704
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    |||||||||||||||||||| |||||||||||||||| ||||    
T  44754745 ggagattagaaatagatttatgatcttatgtaataagcttaa 44754704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 50261334 - 50261293
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    |||||||||||||||||||| |||||||||||||||| ||||    
T  50261334 ggagattagaaatagatttatgatcttatgtaataagcttaa 50261293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 42881944 - 42881912
Alignment:
Q  40 attagaaatagatttaggatcttatgtaataag 72  Q
    |||||||||||||||||||||||||||||||||    
T  42881944 attagaaatagatttaggatcttatgtaataag 42881912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 30233562 - 30233597
Alignment:
Q  42 tagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||| ||||    
T  30233562 tagaaatagatttaggatcttatgtaataagattaa 30233597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 39600528 - 39600563
Alignment:
Q  42 tagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||| ||||    
T  39600528 tagaaatagatttaggatcttatgtaataagcttaa 39600563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 29946093 - 29946059
Alignment:
Q  42 tagaaatagatttaggatcttatgtaataagttta 76  Q
    ||||||||||||||| |||||||||||||||||||    
T  29946093 tagaaatagatttagcatcttatgtaataagttta 29946059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 29962200 - 29962237
Alignment:
Q  40 attagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  29962200 attagaaataggtttaggatcttatgtaataagcttaa 29962237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 12529174 - 12529210
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataag 72  Q
    |||||||||||||||||||| |||||||| |||||||    
T  12529174 ggagattagaaatagatttaagatcttatataataag 12529210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 23983359 - 23983323
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataag 72  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  23983359 ggagattacaaatagatttatgatcttatgtaataag 23983323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 117 - 200
Target Start/End: Complemental strand, 19448 - 19365
Alignment:
Q  117 ttgaacaataaatgattcatttaaatcaattaaatttcaatgaaatttatttgtctttgtctccatgtgtgatccctttgcttc 200  Q
    ||||||||||||| ||| ||||||||| |||||||||||||||||| ||||| ||| | |||| |||| |||||| ||| ||||    
T  19448 ttgaacaataaatcattaatttaaatcgattaaatttcaatgaaatatatttttctatttctctatgtttgatccattttcttc 19365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 11076985 - 11077026
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  11076985 ggagattagaaatagatttaggatcttatgtaataagcttaa 11077026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 13545592 - 13545551
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  13545592 ggagattagaaatagatttaggatcttatgtaataagcttaa 13545551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 13678881 - 13678922
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  13678881 ggagattagaaatagatttaggatcttatgtaataagcttaa 13678922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 28249543 - 28249584
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  28249543 ggagattagaaatagatttaggatcttatgtaataagcttaa 28249584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 31700366 - 31700325
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  31700366 ggagattagaaatagatttaggatcttatgtaataagcttaa 31700325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 35683354 - 35683313
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  35683354 ggagattagaaatagatttaggatcttatgtaataagcttaa 35683313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 39317956 - 39317915
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  39317956 ggagattagaaatagatttaggatcttatgtaataagcttaa 39317915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 39259639 - 39259599
Alignment:
Q  37 gagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  39259639 gagattagaaatagatttaggatcttatgtaataagcttaa 39259599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 585730 - 585697
Alignment:
Q  39 gattagaaatagatttaggatcttatgtaataag 72  Q
    ||||||||||||||||||||||||||||||||||    
T  585730 gattagaaatagatttaggatcttatgtaataag 585697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 628193 - 628226
Alignment:
Q  39 gattagaaatagatttaggatcttatgtaataag 72  Q
    ||||||||||||||||||||||||||||||||||    
T  628193 gattagaaatagatttaggatcttatgtaataag 628226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 23143465 - 23143424
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||| ||||||||||||||| ||||    
T  23143465 ggagattagaaatagatttagaatcttatgtaataagcttaa 23143424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 37099122 - 37099163
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    |||||||||||||||||||||||||| |||||||||| ||||    
T  37099122 ggagattagaaatagatttaggatctgatgtaataaggttaa 37099163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 40104583 - 40104546
Alignment:
Q  40 attagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  40104583 attagaaatagatttaggatcttatgtaataagcttaa 40104546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 43097864 - 43097823
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  43097864 ggagattagaaatagatttaggatattatgtaataagcttaa 43097823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 71
Target Start/End: Original strand, 32338630 - 32338665
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataa 71  Q
    |||||||||||||||||||| |||||||||||||||    
T  32338630 ggagattagaaatagatttaagatcttatgtaataa 32338665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 42191563 - 42191598
Alignment:
Q  42 tagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||| ||||    
T  42191563 tagaaatagatttaggatcttatgtaataagcttaa 42191598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 225472 - 225509
Alignment:
Q  40 attagaaatagatttaggatcttatgtaataagtttaa 77  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  225472 attagaaatagatttaggttcttatgtaataagcttaa 225509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 701885 - 701922
Alignment:
Q  40 attagaaatagatttaggatcttatgtaataagtttaa 77  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  701885 attagaaatagatttaggttcttatgtaataagcttaa 701922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 739095 - 739132
Alignment:
Q  40 attagaaatagatttaggatcttatgtaataagtttaa 77  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  739095 attagaaatagatttaggttcttatgtaataagcttaa 739132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 862990 - 863027
Alignment:
Q  40 attagaaatagatttaggatcttatgtaataagtttaa 77  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  862990 attagaaatagatttaggttcttatgtaataagcttaa 863027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 6348118 - 6348155
Alignment:
Q  40 attagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  6348118 attagaaatagatttaggatcttatataataagcttaa 6348155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 8239325 - 8239284
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||| |||||||||||| |||||||||||| ||||    
T  8239325 ggagattagaagtagatttaggatattatgtaataagcttaa 8239284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 38224757 - 38224716
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||| |||||| | |||||||||||||||||    
T  38224757 ggagattagaaatagttttaggttattatgtaataagtttaa 38224716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 11975771 - 11975812
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  11975771 ggagattagaaatagatttaggatcttatgtaataagcttaa 11975812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 16396142 - 16396183
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  16396142 ggagattagaaatagatttaggatcttatgtaataagcttaa 16396183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 31722241 - 31722200
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  31722241 ggagattagaaatagatttaggatcttatgtaataagcttaa 31722200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 34540769 - 34540728
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  34540769 ggagattagaaatagatttaggatcttatgtaataagcttaa 34540728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 439852 - 439886
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaata 70  Q
    |||||||||||||||||||||||||||||||||||    
T  439852 ggagattagaaatagatttaggatcttatgtaata 439886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 9304338 - 9304297
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  9304338 ggagattagaaatagatttaggatcatatgtaataagcttaa 9304297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 18574736 - 18574771
Alignment:
Q  42 tagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||| ||||    
T  18574736 tagaaatagatttaggatcttatgtaataagcttaa 18574771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 18584617 - 18584652
Alignment:
Q  42 tagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||| ||||    
T  18584617 tagaaatagatttaggatcttatgtaataagcttaa 18584652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 71
Target Start/End: Original strand, 31272055 - 31272090
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataa 71  Q
    ||||||||||||||||||||||||||||| ||||||    
T  31272055 ggagattagaaatagatttaggatcttatataataa 31272090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 71
Target Start/End: Original strand, 31319319 - 31319354
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataa 71  Q
    |||||||||||||| |||||||||||||||||||||    
T  31319319 ggagattagaaataaatttaggatcttatgtaataa 31319354  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 77
Target Start/End: Original strand, 304559 - 304597
Alignment:
Q  39 gattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  304559 gattaaaaatagatttaggatcttatgtaataagcttaa 304597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 228177 - 228218
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  228177 ggaggttagaaatagatttaggatcttatgtaataagtttaa 228218  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 39353907 - 39353948
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  39353907 ggagattagaaatagatttaggatcttatgtaataagcttaa 39353948  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 39587370 - 39587411
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  39587370 ggagattagaaatagatttaggatcttatgtaataagcttaa 39587411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 47013100 - 47013059
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  47013100 ggagattagaaatagatttaggatcttatgtaataagcttaa 47013059  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 47647716 - 47647757
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  47647716 ggagattagaaatagatttaggatcttatgtaataagcttaa 47647757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 49165441 - 49165400
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  49165441 ggagattagaaatagatttaggatcttatgtaataagcttaa 49165400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 41193098 - 41193054
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaagaa 80  Q
    |||||||||||||||||||||||||||| |||||||| |||||||    
T  41193098 ggagattagaaatagatttaggatcttacgtaataagcttaagaa 41193054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 26501536 - 26501495
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||| ||||||| ||||    
T  26501536 ggagattagaaatagatttaggatcttatataataagcttaa 26501495  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 53816734 - 53816775
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    |||||||| |||||||||||||||||||||||||||| ||||    
T  53816734 ggagattacaaatagatttaggatcttatgtaataagcttaa 53816775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 6937225 - 6937257
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaa 68  Q
    |||||||||||||||||||||||||||||||||    
T  6937225 ggagattagaaatagatttaggatcttatgtaa 6937257  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 44205184 - 44205152
Alignment:
Q  45 aaatagatttaggatcttatgtaataagtttaa 77  Q
    |||||||||||||||||||||||||||||||||    
T  44205184 aaatagatttaggatcttatgtaataagtttaa 44205152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 8484168 - 8484133
Alignment:
Q  42 tagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||| ||||    
T  8484168 tagaaatagatttaggatcttatgtaataagcttaa 8484133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 9128443 - 9128478
Alignment:
Q  42 tagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||| ||||    
T  9128443 tagaaatagatttaggatcttatgtaataagcttaa 9128478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 9136550 - 9136585
Alignment:
Q  42 tagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||| ||||    
T  9136550 tagaaatagatttaggatcttatgtaataagcttaa 9136585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 21448384 - 21448349
Alignment:
Q  42 tagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||| ||||    
T  21448384 tagaaatagatttaggatcttatgtaataagcttaa 21448349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 36402160 - 36402119
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    |||||||||||||||||||| |||||||| ||||||| ||||    
T  36402160 ggagattagaaatagatttaagatcttatttaataagcttaa 36402119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 30390511 - 30390543
Alignment:
Q  45 aaatagatttaggatcttatgtaataagtttaa 77  Q
    |||||||||||||||||||||||||||| ||||    
T  30390511 aaatagatttaggatcttatgtaataagcttaa 30390543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 6404914 - 6404955
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  6404914 ggagattagaaatagatttaggatcttatgtaataagcttaa 6404955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 13279475 - 13279516
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  13279475 ggagattagaaatagatttaggatcttatgtaataagcttaa 13279516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 38209131 - 38209172
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  38209131 ggagattagaaatagatttaggatcttatgtaataagcttaa 38209172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 45235025 - 45235066
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  45235025 ggagattagaaatagatttaggatcttatgtaataagcttaa 45235066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 1115903 - 1115939
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataag 72  Q
    |||||||||||||||||||||||||||||||||||||    
T  1115903 ggagattagaaatagatttaggatcttatgtaataag 1115939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 31993415 - 31993375
Alignment:
Q  37 gagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  31993415 gagattagaaatagatttaggatcttatgtaataagcttaa 31993375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 44760833 - 44760869
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataag 72  Q
    |||||||||||||||||||||||||||||||||||||    
T  44760833 ggagattagaaatagatttaggatcttatgtaataag 44760869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 71
Target Start/End: Complemental strand, 30490106 - 30490071
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataa 71  Q
    ||||||||||||||||||||||||||||||||||||    
T  30490106 ggagattagaaatagatttaggatcttatgtaataa 30490071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 1209253 - 1209212
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    |||||||||||||| |||||||||||||||||||||| ||||    
T  1209253 ggagattagaaatatatttaggatcttatgtaataagcttaa 1209212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 17137040 - 17136999
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||| ||||||||||||| ||||    
T  17137040 ggagattagaaatagatttaggaacttatgtaataagcttaa 17136999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 45117808 - 45117849
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    |||||||||||||||||||| |||||||||||||||| ||||    
T  45117808 ggagattagaaatagatttaagatcttatgtaataagcttaa 45117849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 38702945 - 38702909
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataag 72  Q
    ||||||||||||||||||||||||||||| |||||||    
T  38702945 ggagattagaaatagatttaggatcttatataataag 38702909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 5462126 - 5462091
Alignment:
Q  42 tagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||||||||||||||||||| ||||    
T  5462126 tagaaatagatttaggatcttatgtaataagcttaa 5462091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 71
Target Start/End: Original strand, 15912510 - 15912545
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataa 71  Q
    |||||||||||||||||||||||||||||| |||||    
T  15912510 ggagattagaaatagatttaggatcttatggaataa 15912545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 43334476 - 43334511
Alignment:
Q  42 tagaaatagatttaggatcttatgtaataagtttaa 77  Q
    ||||||||||||||| ||||||||||||||||||||    
T  43334476 tagaaatagatttagcatcttatgtaataagtttaa 43334511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 14491 - 14458
Alignment:
Q  39 gattagaaatagatttaggatcttatgtaataag 72  Q
    ||||||||||||||||||||||||||||||||||    
T  14491 gattagaaatagatttaggatcttatgtaataag 14458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 46768 - 46727
Alignment:
Q  36 ggagattagaaatagatttaggatcttatgtaataagtttaa 77  Q
    |||||||||||||||| ||||| |||||||||||||| ||||    
T  46768 ggagattagaaatagaattaggttcttatgtaataagcttaa 46727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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