View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20268_low_2 (Length: 414)

Name: NF20268_low_2
Description: NF20268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20268_low_2
NF20268_low_2
[»] chr1 (4 HSPs)
chr1 (20-240)||(6942976-6943194)
chr1 (280-408)||(6942837-6942965)
chr1 (231-299)||(6942191-6942260)
chr1 (229-265)||(26240113-26240150)
[»] chr5 (4 HSPs)
chr5 (245-408)||(39945860-39946023)
chr5 (228-408)||(16194998-16195179)
chr5 (245-299)||(16194368-16194422)
chr5 (230-324)||(29595547-29595642)
[»] chr8 (3 HSPs)
chr8 (222-265)||(42094756-42094800)
chr8 (228-265)||(42094007-42094045)
chr8 (229-265)||(22632980-22633017)
[»] chr4 (2 HSPs)
chr4 (228-278)||(14527575-14527626)
chr4 (230-265)||(24666129-24666165)
[»] chr7 (3 HSPs)
chr7 (230-283)||(3314955-3315009)
chr7 (229-281)||(34808985-34809038)
chr7 (229-276)||(41358972-41359020)
[»] chr3 (2 HSPs)
chr3 (230-265)||(47571196-47571232)
chr3 (230-265)||(49349676-49349712)
[»] chr2 (1 HSPs)
chr2 (230-277)||(127033-127081)


Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 6943194 - 6942976
Alignment:
Q  20 gcacggtggcgtggctgtcggagaaacgggttgcgtcgaagcgttagagaagaacgatgggtttcaaagattttaattagcgggaataattggagagaat 119  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6943194 gcacggtggcgtggctggcggagaaacgggttgcgtcgaagcgtgagagaagaacgatgggtttcaaagattttaattagcgggaataattggagagaat 6943095  T
Q  120 gattatataccgcgtttgttttatggttggaaagtaactttttatggatttataaggaggtgataattatcgataatgtccattcccatcaaattttata 219  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6943094 gattata--ccgcgtttgttttatggttggaaagtaactttttatggatttataaggaggtgataattatcgataatgtccattcccatcaaattttata 6942997  T
Q  220 tattttttaaggtggattcta 240  Q
    |||||||||||||||||||||    
T  6942996 tattttttaaggtggattcta 6942976  T

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Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 280 - 408
Target Start/End: Complemental strand, 6942965 - 6942837
Alignment:
Q  280 tattccaccgtcagattaaacaagcctacatgatctatttatttaccaccatatttgatccaaattatttctccctctaccagtagatctcgctatccag 379  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6942965 tattccaccgtcagattaaacaagcctacatgatctaattatttaccaccatatttgatccaaattatttctccctctaccggtagatctcgctatccag 6942866  T
Q  380 tctccattgcctgcactttttcttctctc 408  Q
    ||||||||||| |||| ||||||||||||    
T  6942865 tctccattgcccgcaccttttcttctctc 6942837  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 231 - 299
Target Start/End: Original strand, 6942191 - 6942260
Alignment:
Q  231 gtggattctagggt-agggatcaattaagtccctcatcagtgtaccactttattccaccgtcagattaaa 299  Q
    |||||||||| ||| ||||||||||||||||| ||||| ||| |||||||||||||||||| ||||||||    
T  6942191 gtggattctaaggtgagggatcaattaagtccttcatcggtgaaccactttattccaccgttagattaaa 6942260  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 26240113 - 26240150
Alignment:
Q  229 aggtggattctagggt-agggatcaattaagtccctca 265  Q
    |||||||||||||||| |||||||||||||||||||||    
T  26240113 aggtggattctagggtgagggatcaattaagtccctca 26240150  T

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Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 245 - 408
Target Start/End: Original strand, 39945860 - 39946023
Alignment:
Q  245 agggatcaattaagtccctcatcagtgtaccactttattccaccgtcagattaaacaagcctacatgatctatttatttaccaccatatttgatccaaat 344  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||    
T  39945860 agggaccaattaagtccctcatcggtgtaccactttattccaccgtcagattaaacaagcctacgtgatctaattttttaccaccatatttgatccaaat 39945959  T
Q  345 tatttctccctctaccagtagatctcgctatccagtctccattgcctgcactttttcttctctc 408  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||    
T  39945960 tatttctccctctaccagttgatctcgctatccagtttccattgcccgcactttttcttctctc 39946023  T

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Target: chr5; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 228 - 408
Target Start/End: Complemental strand, 16195179 - 16194998
Alignment:
Q  228 aaggtggattctagggt-agggatcaattaagtccctcatcagtgtaccactttattccaccgtcagattaaacaagcctacatgatctatttatttacc 326  Q
    ||||||||||||||||| ||||||||||||||||| |||   ||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||    
T  16195179 aaggtggattctagggtgagggatcaattaagtccatcactggtgtaccacattattccaccgtcagattaaacaagcctacgtgatctaattatttacc 16195080  T
Q  327 accatatttgatccaaattatttctccctctaccagtagatctcgctatccagtctccattgcctgcactttttcttctctc 408  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||    
T  16195079 accatacttgatcctaattatttctccctctaccagtagatctcgctatccagtctccatcgcatgcaccttttcttctctc 16194998  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 245 - 299
Target Start/End: Original strand, 16194368 - 16194422
Alignment:
Q  245 agggatcaattaagtccctcatcagtgtaccactttattccaccgtcagattaaa 299  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  16194368 agggatcaattaagtccatcatcagtgaaccactttattccaccgtcagattaaa 16194422  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 324
Target Start/End: Complemental strand, 29595642 - 29595547
Alignment:
Q  230 ggtggattctagggt-agggatcaattaagtccctcatcagtgtaccactttattccaccgtcagattaaacaagcctacatgatctatttattta 324  Q
    |||||||||||| || |||| |||||||||||||||| |||||||||| ||||||  ||| | |||||||| ||| ||| | |||||  |||||||    
T  29595642 ggtggattctagcgtgagggttcaattaagtccctcaccagtgtaccagtttatttgaccattagattaaataagactataagatctcattattta 29595547  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 265
Target Start/End: Complemental strand, 42094800 - 42094756
Alignment:
Q  222 ttttttaaggtggattctagggt-agggatcaattaagtccctca 265  Q
    |||||||||||| |||||||||| |||||||||||||||||||||    
T  42094800 ttttttaaggtgaattctagggtgagggatcaattaagtccctca 42094756  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 265
Target Start/End: Original strand, 42094007 - 42094045
Alignment:
Q  228 aaggtggattctagggt-agggatcaattaagtccctca 265  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  42094007 aaggtggattctagggtgagggatcaattaagtccctca 42094045  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 22633017 - 22632980
Alignment:
Q  229 aggtggattctagggt-agggatcaattaagtccctca 265  Q
    |||||||||||||||| |||||||||||||||||||||    
T  22633017 aggtggattctagggtgagggatcaattaagtccctca 22632980  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 14527626 - 14527575
Alignment:
Q  228 aaggtggattctagggt-agggatcaattaagtccctcatcagtgtaccact 278  Q
    ||||||||||||||||| ||||||||||||||||||||| | ||| ||||||    
T  14527626 aaggtggattctagggtgagggatcaattaagtccctcaccggtgaaccact 14527575  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 265
Target Start/End: Original strand, 24666129 - 24666165
Alignment:
Q  230 ggtggattctagggt-agggatcaattaagtccctca 265  Q
    ||||||||||||||| |||||||||||||||||||||    
T  24666129 ggtggattctagggtgagggatcaattaagtccctca 24666165  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 3314955 - 3315009
Alignment:
Q  230 ggtggattctagggt-agggatcaattaagtccctcatcagtgtaccactttatt 283  Q
    ||||||||||| ||| |||| |||||||||||||||| | |||||||||||||||    
T  3314955 ggtggattctacggtgagggttcaattaagtccctcaccggtgtaccactttatt 3315009  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 34809038 - 34808985
Alignment:
Q  229 aggtggattctagggt-agggatcaattaagtccctcatcagtgtaccacttta 281  Q
    ||||||||||||| || |||| |||||||||||| ||||| |||||||||||||    
T  34809038 aggtggattctagagtgagggttcaattaagtccttcatcggtgtaccacttta 34808985  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 41359020 - 41358972
Alignment:
Q  229 aggtggattctagggt-agggatcaattaagtccctcatcagtgtacca 276  Q
    |||||||||||||||| ||||||||||||||||| ||| ||||| ||||    
T  41359020 aggtggattctagggtgagggatcaattaagtccatcaccagtggacca 41358972  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 265
Target Start/End: Original strand, 47571196 - 47571232
Alignment:
Q  230 ggtggattctagggt-agggatcaattaagtccctca 265  Q
    ||||||||||||||| |||||||||||||||||||||    
T  47571196 ggtggattctagggtgagggatcaattaagtccctca 47571232  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 265
Target Start/End: Original strand, 49349676 - 49349712
Alignment:
Q  230 ggtggattctagggt-agggatcaattaagtccctca 265  Q
    ||||||||||||||| |||||||||||||||||||||    
T  49349676 ggtggattctagggtgagggatcaattaagtccctca 49349712  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 277
Target Start/End: Original strand, 127033 - 127081
Alignment:
Q  230 ggtggattctagggt-agggatcaattaagtccctcatcagtgtaccac 277  Q
    ||||||||||||||| |||| |||| ||||||||||||||||| |||||    
T  127033 ggtggattctagggtgagggttcaactaagtccctcatcagtggaccac 127081  T

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