View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20268_low_4 (Length: 319)

Name: NF20268_low_4
Description: NF20268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20268_low_4
NF20268_low_4
[»] chr4 (5 HSPs)
chr4 (16-219)||(3221216-3221422)
chr4 (16-216)||(41952197-41952404)
chr4 (24-88)||(3220575-3220639)
chr4 (27-76)||(5235435-5235484)
chr4 (27-76)||(20175031-20175080)
[»] chr3 (13 HSPs)
chr3 (16-219)||(46186833-46187031)
chr3 (24-88)||(46185816-46185880)
chr3 (24-72)||(55477965-55478013)
chr3 (26-72)||(41885485-41885531)
chr3 (27-76)||(930371-930420)
chr3 (27-76)||(11441710-11441759)
chr3 (27-76)||(20586133-20586182)
chr3 (27-76)||(21166094-21166143)
chr3 (27-76)||(26006716-26006765)
chr3 (27-76)||(32473822-32473871)
chr3 (27-76)||(45000376-45000425)
chr3 (27-76)||(50766690-50766738)
chr3 (24-72)||(92865-92913)
[»] scaffold0039 (2 HSPs)
scaffold0039 (24-88)||(90673-90737)
scaffold0039 (16-52)||(90968-91004)
[»] chr8 (3 HSPs)
chr8 (24-89)||(2358620-2358683)
chr8 (27-76)||(14197720-14197769)
chr8 (27-76)||(39439819-39439868)
[»] chr7 (6 HSPs)
chr7 (24-72)||(20900493-20900541)
chr7 (27-77)||(24322288-24322338)
chr7 (27-76)||(20560219-20560268)
chr7 (27-76)||(33139835-33139884)
chr7 (27-76)||(40641108-40641157)
chr7 (27-76)||(42901074-42901123)
[»] chr6 (3 HSPs)
chr6 (27-76)||(34717303-34717352)
chr6 (27-76)||(28983230-28983279)
chr6 (27-76)||(34717693-34717742)
[»] chr5 (3 HSPs)
chr5 (24-76)||(27645893-27645945)
chr5 (27-77)||(33283226-33283276)
chr5 (27-76)||(5620807-5620856)
[»] chr2 (2 HSPs)
chr2 (24-72)||(27276721-27276769)
chr2 (27-76)||(16681627-16681676)
[»] chr1 (9 HSPs)
chr1 (26-89)||(41465296-41465357)
chr1 (27-76)||(2821019-2821068)
chr1 (27-76)||(2821427-2821476)
chr1 (27-76)||(12800408-12800457)
chr1 (27-76)||(28371260-28371309)
chr1 (27-76)||(38328824-38328873)
chr1 (27-76)||(48594163-48594212)
chr1 (27-76)||(48598774-48598823)
chr1 (27-76)||(50164647-50164696)


Alignment Details
Target: chr4 (Bit Score: 181; Significance: 9e-98; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 3221422 - 3221216
Alignment:
Q  16 atattgaccctttagatcaaatcaagaacacattcttatgatactctctcctcactagattatttcttttacaccactatacacca---actttcttcac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||    
T  3221422 atattgaccctttagatcaaatcaagaacacattcttatgatactctctcctcactagattatttcttttacaccactatacaccaccaactttcttcac 3221323  T
Q  113 cagacccacgaatgcttgattcctctccatatctctgtgtaagcttctttcccatggctttttccatatctttgtgcatgctttgtctggatttcactca 212  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3221322 cagacccgcaaatgcttgattcctctccatatctctgtgtaagcttctttcccatggctttttcaatatctttgtgcatgctttgtctggatttcactca 3221223  T
Q  213 tacttgg 219  Q
    |||||||    
T  3221222 tacttgg 3221216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 41952404 - 41952197
Alignment:
Q  16 atattgaccctttagatcaaatcaagaacacattcttatgatactctctcctcactagattatttcttttacaccactatacaccaac------tttctt 109  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||| |      ||||      
T  41952404 atattgaccctttagatcaaatcaaaaacacattcttataatactctctcctcacta-attattttttttacaccactatacaccaccggctcttttcac 41952306  T
Q  110 ca--ccagacccacgaatgcttgattcctctccatatctctgtgtaagcttctttcccatggctttttccatatctttgtgcatgctttgtctggatttc 207  Q
    ||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||| ||    
T  41952305 caaaccaaacccacgaatgcttgattcctctccatatctctgtgtaagcttctttcccatggctttttcaatatctctgtgcatgctttgtcttgatatc 41952206  T
Q  208 actcatact 216  Q
    |||||||||    
T  41952205 actcatact 41952197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 3220575 - 3220639
Alignment:
Q  24 cctttagatcaaatcaagaacacattcttatgatactctctcctcactagattatttcttttaca 88  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  3220575 cctttagatcaaatcaagaacacattcttataatactctctccacactagattatttcttttaca 3220639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 5235435 - 5235484
Alignment:
Q  27 ttagatcaaatcaagaacacattcttatgatactctctcctcactagatt 76  Q
    |||||||||| ||||||||||| ||||| |||||| ||| ||||||||||    
T  5235435 ttagatcaaaccaagaacacatccttatcatactcactcatcactagatt 5235484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 20175031 - 20175080
Alignment:
Q  27 ttagatcaaatcaagaacacattcttatgatactctctcctcactagatt 76  Q
    |||||||||| ||||||||||| ||||| |||||| ||| ||||||||||    
T  20175031 ttagatcaaaccaagaacacatccttatcatactccctcatcactagatt 20175080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 46187031 - 46186833
Alignment:
Q  16 atattgaccctttagatcaaatcaagaacacattcttatgatactctctcctcactagattatttcttttacaccactatacaccaactttcttcaccag 115  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |    ||||||      
T  46187031 atattgaccctttagatcaaatcaagaacacattcttataatactctctcatcactagattatttcttttacaccactatacaccaccaactttcacc-- 46186934  T
Q  116 acccacgaatgcttgattcctctccatatctctgtgtaagcttctttcccatggctttttccatatctttgtgcatgctttgtctggatttcactcatac 215  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  46186933 ---cacgaatgcttgattcctctccatatctctgtgtaagcttctttcccatggctttttcaatatctttgtgcatgctttgtctggatttcactcatac 46186837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 46185816 - 46185880
Alignment:
Q  24 cctttagatcaaatcaagaacacattcttatgatactctctcctcactagattatttcttttaca 88  Q
    ||||||||||||||||| |||||||| |||| ||||||||||| ||||| |||||||||||||||    
T  46185816 cctttagatcaaatcaaaaacacatttttataatactctctccacactatattatttcttttaca 46185880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 55478013 - 55477965
Alignment:
Q  24 cctttagatcaaatcaagaacacattcttatgatactctctcctcacta 72  Q
    |||||||||||||||||||||||||| |||| ||||||||||| |||||    
T  55478013 cctttagatcaaatcaagaacacatttttataatactctctccacacta 55477965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 41885485 - 41885531
Alignment:
Q  26 tttagatcaaatcaagaacacattcttatgatactctctcctcacta 72  Q
    |||||||||||||||||||||||| |||| |||| |||||| |||||    
T  41885485 tttagatcaaatcaagaacacatttttataataccctctccacacta 41885531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 930420 - 930371
Alignment:
Q  27 ttagatcaaatcaagaacacattcttatgatactctctcctcactagatt 76  Q
    |||||||||| ||||||||||| ||||| |||||| ||| ||||||||||    
T  930420 ttagatcaaaccaagaacacatccttatcatactccctcatcactagatt 930371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 11441710 - 11441759
Alignment:
Q  27 ttagatcaaatcaagaacacattcttatgatactctctcctcactagatt 76  Q
    |||||||||| ||||||||||| ||||| |||||| ||| ||||||||||    
T  11441710 ttagatcaaaccaagaacacatccttatcatactccctcatcactagatt 11441759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 20586133 - 20586182
Alignment:
Q  27 ttagatcaaatcaagaacacattcttatgatactctctcctcactagatt 76  Q
    |||||||||||||||||||||| ||||  |||||| ||| ||||||||||    
T  20586133 ttagatcaaatcaagaacacatccttaccatactccctcatcactagatt 20586182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 21166143 - 21166094
Alignment:
Q  27 ttagatcaaatcaagaacacattcttatgatactctctcctcactagatt 76  Q
    |||||||||| ||||||||||| ||||| |||||| ||| ||||||||||    
T  21166143 ttagatcaaaccaagaacacatccttatcatactccctcatcactagatt 21166094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 26006765 - 26006716
Alignment:
Q  27 ttagatcaaatcaagaacacattcttatgatactctctcctcactagatt 76  Q
    |||||||||| ||||||||||| ||||| |||||| ||| ||||||||||    
T  26006765 ttagatcaaaccaagaacacatccttatcatactccctcatcactagatt 26006716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 32473822 - 32473871
Alignment:
Q  27 ttagatcaaatcaagaacacattcttatgatactctctcctcactagatt 76  Q
    |||||||||| ||||||||||| ||||| |||||| ||| ||||||||||    
T  32473822 ttagatcaaaccaagaacacatccttattatactccctcatcactagatt 32473871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 45000376 - 45000425
Alignment:
Q  27 ttagatcaaatcaagaacacattcttatgatactctctcctcactagatt 76  Q
    |||||||||||||||||||||| ||||  |||||| ||| ||||||||||    
T  45000376 ttagatcaaatcaagaacacatccttaccatactccctcatcactagatt 45000425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 50766690 - 50766738
Alignment:
Q  27 ttagatcaaatcaagaacacattcttatgatactctctcctcactagatt 76  Q
    |||||||||| ||||||||||||||||| |||||| ||| ||||||||||    
T  50766690 ttagatcaaaccaagaacacattcttatcatactc-ctcatcactagatt 50766738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 92913 - 92865
Alignment:
Q  24 cctttagatcaaatcaagaacacattcttatgatactctctcctcacta 72  Q
    |||||||||||||||||||||||| | |||  ||||||||||| |||||    
T  92913 cctttagatcaaatcaagaacacacttttacaatactctctccacacta 92865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 90673 - 90737
Alignment:
Q  24 cctttagatcaaatcaagaacacattcttatgatactctctcctcactagattatttcttttaca 88  Q
    ||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||    
T  90673 cctttagatcaaatcaaaaacacattcttataatactctctccacactagattatttcttttaca 90737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 91004 - 90968
Alignment:
Q  16 atattgaccctttagatcaaatcaagaacacattctt 52  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  91004 atattgatcctttagatcaaatcaagaacacgttctt 90968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 2358620 - 2358683
Alignment:
Q  24 cctttagatcaaatcaagaacacattcttatgatactctctcctcactagattatttcttttacac 89  Q
    |||||||||||||||||||| |||||||||| ||||||||| | ||||||||  ||||||||||||    
T  2358620 cctttagatcaaatcaagaatacattcttataatactctcttcacactagat--tttcttttacac 2358683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 14197720 - 14197769
Alignment:
Q  27 ttagatcaaatcaagaacacattcttatgatactctctcctcactagatt 76  Q
    |||||||||| ||||||||||| ||||| |||||| ||| ||||||||||    
T  14197720 ttagatcaaagcaagaacacatccttatcatactccctcatcactagatt 14197769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 39439819 - 39439868
Alignment:
Q  27 ttagatcaaatcaagaacacattcttatgatactctctcctcactagatt 76  Q
    |||||||||| ||||||||||| ||||| |||||| ||| ||||||||||    
T  39439819 ttagatcaaaccaagaacacatccttatcatactccctcatcactagatt 39439868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 20900493 - 20900541
Alignment:
Q  24 cctttagatcaaatcaagaacacattcttatgatactctctcctcacta 72  Q
    |||||||||||||||||||||||||| |||| ||||||||||| |||||    
T  20900493 cctttagatcaaatcaagaacacatttttataatactctctccacacta 20900541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 24322338 - 24322288
Alignment:
Q  27 ttagatcaaatcaagaacacattcttatgatactctctcctcactagatta 77  Q
    ||||||||||| | ||||||||| |||| |||||||||| |||||||||||    
T  24322338 ttagatcaaatgaggaacacatttttatcatactctctcatcactagatta 24322288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 20560268 - 20560219
Alignment:
Q  27 ttagatcaaatcaagaacacattcttatgatactctctcctcactagatt 76  Q
    |||||||||| ||||||||||| ||||| |||||| ||| ||||||||||    
T  20560268 ttagatcaaaccaagaacacatccttatcatactccctcatcactagatt 20560219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 33139835 - 33139884
Alignment:
Q  27 ttagatcaaatcaagaacacattcttatgatactctctcctcactagatt 76  Q
    |||||||||| ||||||||||| ||||| |||||| ||| ||||||||||    
T  33139835 ttagatcaaaccaagaacacatccttatcatactccctcatcactagatt 33139884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 40641157 - 40641108
Alignment:
Q  27 ttagatcaaatcaagaacacattcttatgatactctctcctcactagatt 76  Q
    |||||||||||||||||||||| ||||| |||||| ||  ||||||||||    
T  40641157 ttagatcaaatcaagaacacatccttatcatactcccttatcactagatt 40641108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 42901123 - 42901074
Alignment:
Q  27 ttagatcaaatcaagaacacattcttatgatactctctcctcactagatt 76  Q
    |||||||||| |||||||||||| |||| |||||| ||| ||||||||||    
T  42901123 ttagatcaaaccaagaacacattgttatcatactccctcatcactagatt 42901074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 34717303 - 34717352
Alignment:
Q  27 ttagatcaaatcaagaacacattcttatgatactctctcctcactagatt 76  Q
    |||||||||||||||||||| | ||||| |||||||||| ||||||||||    
T  34717303 ttagatcaaatcaagaacacgtccttatcatactctctcatcactagatt 34717352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 28983279 - 28983230
Alignment:
Q  27 ttagatcaaatcaagaacacattcttatgatactctctcctcactagatt 76  Q
    |||||||||| ||||||||||| ||||| |||||| ||| ||||||||||    
T  28983279 ttagatcaaaccaagaacacatccttatcatactccctcatcactagatt 28983230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 34717742 - 34717693
Alignment:
Q  27 ttagatcaaatcaagaacacattcttatgatactctctcctcactagatt 76  Q
    |||||||||| ||||||||||| ||||| |||||| ||| ||||||||||    
T  34717742 ttagatcaaaccaagaacacatccttatcatactccctcatcactagatt 34717693  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 27645893 - 27645945
Alignment:
Q  24 cctttagatcaaatcaagaacacattcttatgatactctctcctcactagatt 76  Q
    ||||||||| ||||||||||||||||||||| | ||||||| | |||||||||    
T  27645893 cctttagataaaatcaagaacacattcttataacactctcttcacactagatt 27645945  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 33283226 - 33283276
Alignment:
Q  27 ttagatcaaatcaagaacacattcttatgatactctctcctcactagatta 77  Q
    ||||||||||| | ||||||||| |||| |||||||||| |||||||||||    
T  33283226 ttagatcaaatgaggaacacatttttatcatactctctcatcactagatta 33283276  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 5620856 - 5620807
Alignment:
Q  27 ttagatcaaatcaagaacacattcttatgatactctctcctcactagatt 76  Q
    |||||||||| ||||||||||| ||||| |||||| ||| ||||||||||    
T  5620856 ttagatcaaaccaagaacacatccttatcatactccctcatcactagatt 5620807  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 27276721 - 27276769
Alignment:
Q  24 cctttagatcaaatcaagaacacattcttatgatactctctcctcacta 72  Q
    |||||||||||||||||||||||||  |||| ||||||||||| |||||    
T  27276721 cctttagatcaaatcaagaacacataattataatactctctccacacta 27276769  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 16681627 - 16681676
Alignment:
Q  27 ttagatcaaatcaagaacacattcttatgatactctctcctcactagatt 76  Q
    |||||||||| ||||||||||| ||||| |||||| ||| ||||||||||    
T  16681627 ttagatcaaaccaagaacacatccttatcatactccctcatcactagatt 16681676  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 41465296 - 41465357
Alignment:
Q  26 tttagatcaaatcaagaacacattcttatgatactctctcctcactagattatttcttttacac 89  Q
    |||||||||||||| ||| |||||||||| ||||||||| | ||||||||  ||||||||||||    
T  41465296 tttagatcaaatcaggaatacattcttataatactctcttcacactagat--tttcttttacac 41465357  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 2821019 - 2821068
Alignment:
Q  27 ttagatcaaatcaagaacacattcttatgatactctctcctcactagatt 76  Q
    |||||||||| ||||||||||| ||||| |||||| ||| ||||||||||    
T  2821019 ttagatcaaaccaagaacacatccttatcatactccctcatcactagatt 2821068  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 2821476 - 2821427
Alignment:
Q  27 ttagatcaaatcaagaacacattcttatgatactctctcctcactagatt 76  Q
    |||||||||| ||||||||||| ||||| |||||| ||| ||||||||||    
T  2821476 ttagatcaaaccaagaacacatccttatcatactccctcatcactagatt 2821427  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 12800457 - 12800408
Alignment:
Q  27 ttagatcaaatcaagaacacattcttatgatactctctcctcactagatt 76  Q
    |||||||||| ||||||||||| ||||| |||||| ||| ||||||||||    
T  12800457 ttagatcaaaccaagaacacatccttatcatactccctcatcactagatt 12800408  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 28371260 - 28371309
Alignment:
Q  27 ttagatcaaatcaagaacacattcttatgatactctctcctcactagatt 76  Q
    |||||||||| |||||||||||  |||| |||||||||| ||||||||||    
T  28371260 ttagatcaaaccaagaacacatctttatcatactctctcatcactagatt 28371309  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 38328873 - 38328824
Alignment:
Q  27 ttagatcaaatcaagaacacattcttatgatactctctcctcactagatt 76  Q
    |||||||||| ||||||||||| ||||| |||||| ||| ||||||||||    
T  38328873 ttagatcaaaccaagaacacatccttatcatactccctcatcactagatt 38328824  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 48594212 - 48594163
Alignment:
Q  27 ttagatcaaatcaagaacacattcttatgatactctctcctcactagatt 76  Q
    |||||||||| ||||||||||| ||||| |||||| ||| ||||||||||    
T  48594212 ttagatcaaaccaagaacacatccttatcatactccctcatcactagatt 48594163  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 48598823 - 48598774
Alignment:
Q  27 ttagatcaaatcaagaacacattcttatgatactctctcctcactagatt 76  Q
    |||||||||| ||||||||||| ||||| |||||| ||| ||||||||||    
T  48598823 ttagatcaaaccaagaacacatccttatcatactccctcatcactagatt 48598774  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 50164696 - 50164647
Alignment:
Q  27 ttagatcaaatcaagaacacattcttatgatactctctcctcactagatt 76  Q
    |||||||||||||||||||||| ||||| ||||||  || ||||||||||    
T  50164696 ttagatcaaatcaagaacacatccttatcatactccttcatcactagatt 50164647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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