View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20268_low_5 (Length: 279)
Name: NF20268_low_5
Description: NF20268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20268_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 270
Target Start/End: Original strand, 28839577 - 28839840
Alignment:
| Q |
12 |
accaaaaaggttacaaaataaaccagatgagggttactcttccttaattccaatttttcataatttcatcaatcataaaattagaaagtatcatgtgaaa |
111 |
Q |
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| T |
28839577 |
accaaaaaggttacaaaataaaccagaagagggttactcttccttaattccaatttttcataatttcatcaatcataaaattagaaagtatcatgtgaaa |
28839676 |
T |
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| Q |
112 |
caaagttccattcgcaaagcccaagccaaaagcgagtag-----cctgcttgtgtatgtgaggttctttcctctcacttgttcatcttgttttgagtact |
206 |
Q |
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| T |
28839677 |
caaagttccattcgcaaagcccaagccaaaagcaagtagactgaactgcttgtgtatgtgaggttctttcctctcgcttgttcatcttgttttgagtact |
28839776 |
T |
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| Q |
207 |
cgatgaaatagtagcataagagaagagattggacaaatgagtccacttcaatatcacacctatg |
270 |
Q |
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| T |
28839777 |
cgatgaaatagtagcataagagaagagattggacaaatgagtccacttcaatatcacacctatg |
28839840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 28827619 - 28827655
Alignment:
| Q |
28 |
aataaaccagatgagggttactcttccttaattccaa |
64 |
Q |
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| T |
28827619 |
aataaaccagatgagggttactcttcgttaattccaa |
28827655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 28836958 - 28836994
Alignment:
| Q |
28 |
aataaaccagatgagggttactcttccttaattccaa |
64 |
Q |
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| T |
28836958 |
aataaaccagatgagggttactcttcgttaattccaa |
28836994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 114 - 230
Target Start/End: Original strand, 429205 - 429326
Alignment:
| Q |
114 |
aagttccattcgcaaagcccaagccaaaagcgagtagcc-----tgcttgtgtatgtgaggttctttcctctcacttgttcatcttgttttgagtactcg |
208 |
Q |
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| T |
429205 |
aagttccattcgaaaagcccaagccaaaagcgagtagaccgaactgcttgcttatgcaaggttctttcctctcgcttgttcatcttgttttgagtactcg |
429304 |
T |
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| Q |
209 |
atgaaatagtagcataagagaa |
230 |
Q |
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| T |
429305 |
actaaataatagcataagagaa |
429326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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