View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20268_low_6 (Length: 263)

Name: NF20268_low_6
Description: NF20268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20268_low_6
NF20268_low_6
[»] chr6 (16 HSPs)
chr6 (17-238)||(34898731-34898950)
chr6 (118-238)||(34620921-34621041)
chr6 (118-238)||(34748358-34748478)
chr6 (167-238)||(1485125-1485196)
chr6 (117-231)||(882728-882842)
chr6 (130-238)||(34027359-34027467)
chr6 (167-238)||(31305826-31305897)
chr6 (194-238)||(2234550-2234595)
chr6 (130-234)||(25388116-25388219)
chr6 (167-238)||(4910943-4911014)
chr6 (115-204)||(434163-434253)
chr6 (108-162)||(19601372-19601426)
chr6 (200-238)||(30926790-30926828)
chr6 (120-162)||(34026417-34026459)
chr6 (182-238)||(852567-852623)
chr6 (178-238)||(17225887-17225947)
[»] chr4 (12 HSPs)
chr4 (106-221)||(33843763-33843878)
chr4 (167-238)||(55927749-55927820)
chr4 (192-238)||(4243422-4243468)
chr4 (198-238)||(33844012-33844052)
chr4 (167-238)||(8604601-8604672)
chr4 (111-162)||(48045675-48045726)
chr4 (192-238)||(2207114-2207160)
chr4 (172-238)||(32818354-32818420)
chr4 (168-213)||(25319108-25319153)
chr4 (192-229)||(32100336-32100373)
chr4 (178-238)||(10185229-10185289)
chr4 (178-237)||(16551993-16552050)
[»] chr7 (11 HSPs)
chr7 (106-238)||(27571897-27572029)
chr7 (115-238)||(45557400-45557523)
chr7 (108-236)||(40561678-40561806)
chr7 (108-218)||(33853404-33853514)
chr7 (120-238)||(38123598-38123716)
chr7 (114-238)||(22310385-22310509)
chr7 (168-234)||(40795969-40796035)
chr7 (130-234)||(12306760-12306866)
chr7 (167-236)||(41788353-41788422)
chr7 (108-137)||(45823307-45823336)
chr7 (130-238)||(40491613-40491721)
[»] chr2 (11 HSPs)
chr2 (112-238)||(1976788-1976916)
chr2 (167-238)||(44439289-44439360)
chr2 (167-213)||(15220840-15220886)
chr2 (167-238)||(16013683-16013760)
chr2 (166-236)||(37420171-37420243)
chr2 (99-137)||(11650668-11650706)
chr2 (192-238)||(42741012-42741058)
chr2 (166-211)||(40401621-40401666)
chr2 (108-152)||(3476349-3476393)
chr2 (167-211)||(4908852-4908896)
chr2 (178-238)||(42982579-42982639)
[»] scaffold0361 (1 HSPs)
scaffold0361 (167-238)||(14093-14164)
[»] chr3 (15 HSPs)
chr3 (110-234)||(36302222-36302348)
chr3 (113-238)||(46853459-46853584)
chr3 (99-238)||(51285605-51285744)
chr3 (192-263)||(30301002-30301073)
chr3 (169-238)||(35264392-35264461)
chr3 (170-238)||(40147832-40147900)
chr3 (192-238)||(35058396-35058443)
chr3 (172-238)||(31708223-31708289)
chr3 (112-213)||(5406964-5407061)
chr3 (167-238)||(27266773-27266844)
chr3 (179-238)||(37335025-37335084)
chr3 (112-231)||(40136096-40136214)
chr3 (128-238)||(3776557-3776667)
chr3 (167-237)||(35253446-35253516)
chr3 (167-228)||(29475364-29475425)
[»] chr1 (21 HSPs)
chr1 (113-228)||(1233350-1233465)
chr1 (167-238)||(48548993-48549062)
chr1 (192-234)||(28287340-28287382)
chr1 (173-238)||(213522-213587)
chr1 (166-231)||(1514385-1514450)
chr1 (108-209)||(6932104-6932205)
chr1 (192-236)||(20026168-20026212)
chr1 (192-236)||(24587949-24587993)
chr1 (166-230)||(52263625-52263689)
chr1 (167-238)||(4458421-4458492)
chr1 (167-238)||(34915101-34915172)
chr1 (192-238)||(7790646-7790692)
chr1 (192-237)||(8382002-8382047)
chr1 (193-238)||(47892393-47892438)
chr1 (170-238)||(3016197-3016265)
chr1 (178-238)||(10324928-10324988)
chr1 (198-238)||(17284131-17284171)
chr1 (167-238)||(30557539-30557608)
chr1 (182-234)||(30850393-30850445)
chr1 (140-204)||(35961437-35961501)
chr1 (179-235)||(52339719-52339775)
[»] chr8 (9 HSPs)
chr8 (129-234)||(16972005-16972110)
chr8 (167-234)||(32927931-32927998)
chr8 (167-238)||(35495295-35495366)
chr8 (192-238)||(13384658-13384704)
chr8 (167-238)||(32767422-32767495)
chr8 (113-159)||(38386430-38386476)
chr8 (109-209)||(2778577-2778677)
chr8 (130-238)||(26100088-26100196)
chr8 (108-136)||(43024963-43024991)
[»] chr5 (8 HSPs)
chr5 (113-238)||(15368508-15368632)
chr5 (167-235)||(8591519-8591587)
chr5 (132-219)||(35138967-35139054)
chr5 (168-238)||(36639972-36640042)
chr5 (191-228)||(7925431-7925468)
chr5 (108-153)||(9952555-9952600)
chr5 (193-237)||(9185020-9185064)
chr5 (169-213)||(37886019-37886063)


Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 34898950 - 34898731
Alignment:
Q  17 cacagaggtcccgttcttgccatgatcataagcagctacggtaggcctctccctctagtagtcttttcaaaattaagtgtatgtttggcgttgacaaaaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  34898950 cacagaggtcccgttcttgccatgatcataagcagctacggtaggcctctccctctagtagtattttcaaaattaagtgtatgtttggcgttgacaaaaa 34898851  T
Q  117 ttgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcga 216  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  34898850 ttgattttgattgaattgattctggc-taaagtgagtcgaaggtaatacaatttatg-ttcgatacatttgtgttaaagtgagttgaacaataaattcga 34898753  T
Q  217 gtgttaaaatcaattctagaat 238  Q
    ||||||||||||||||||||||    
T  34898752 gtgttaaaatcaattctagaat 34898731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 238
Target Start/End: Complemental strand, 34621041 - 34620921
Alignment:
Q  118 tgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgag 217  Q
    ||||||||| ||||| ||||||||||  || ||||| |||| |||    |||||||||| ||||||||  ||| ||||||||||||| ||||||||  ||    
T  34621041 tgattttgagtgaatggattctggctagaattgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttag 34620942  T
Q  218 tgttaaaatcaattctagaat 238  Q
    ||| |||||||||||||||||    
T  34620941 tgtaaaaatcaattctagaat 34620921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 238
Target Start/End: Complemental strand, 34748478 - 34748358
Alignment:
Q  118 tgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgag 217  Q
    ||||||||| ||||| ||||||||||  || ||||| |||| |||    |||||||||| ||||||||  ||| ||||||||||||| ||||||||  ||    
T  34748478 tgattttgagtgaatggattctggctagaattgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttag 34748379  T
Q  218 tgttaaaatcaattctagaat 238  Q
    ||| |||||||||||||||||    
T  34748378 tgtaaaaatcaattctagaat 34748358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 1485125 - 1485196
Alignment:
Q  167 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    ||||| |||| |||||| |  ||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  1485125 atttacgtttggatacacttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattctagaat 1485196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 231
Target Start/End: Complemental strand, 882842 - 882728
Alignment:
Q  117 ttgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcga 216  Q
    |||| ||||| |||||||||||| | | ||| ||||| |||| ||| |  |||||||||| ||||||||| ||  |||||||||| ||||||||||| ||    
T  882842 ttgagtttgagtgaattgattctagttaaaattgagttgaaggtaaaatgatttatgtttggatacattcatgcaaaagtgagttaaacaataaatttga 882743  T
Q  217 gtgttaaaatcaatt 231  Q
     ||| ||||||||||    
T  882742 atgtaaaaatcaatt 882728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 238
Target Start/End: Original strand, 34027359 - 34027467
Alignment:
Q  130 aattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaa 229  Q
    |||||||| ||||| ||||||||| |||  | | ||  |||||| || |||| |||| ||| | ||||||||||| |||||||| |||||| ||||||||    
T  34027359 aattgattgtggctaaaagtgagttgaaagtgagacggtttatggttagatatattcatgtaagagtgagttgaataataaatttgagtgtaaaaatcaa 34027458  T
Q  230 ttctagaat 238  Q
    |||||||||    
T  34027459 ttctagaat 34027467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 31305826 - 31305897
Alignment:
Q  167 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    |||||||||| |||| |||  ||| |||||||||||| ||||||||| ||||||  ||||||||||||||||    
T  31305826 atttatgtttggatatattaatgtaaaagtgagttgatcaataaatttgagtgtataaatcaattctagaat 31305897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 2234595 - 2234550
Alignment:
Q  194 agtgagttgaacaa-taaattcgagtgttaaaatcaattctagaat 238  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||    
T  2234595 agtgagttgaacaaataaatttgagtgttaaaatcaattctagaat 2234550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 234
Target Start/End: Complemental strand, 25388219 - 25388116
Alignment:
Q  130 aattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaa 229  Q
    ||||||||||| |||||| ||||| | || |||||  |||||  ||| |||| |||  ||| |||||||||||| ||||||||| |||||| ||||||||    
T  25388219 aattgattctgacttaaaatgagttggaggtaatatgatttacatttggatatatttatgtaaaagtgagttga-caataaatttgagtgtcaaaatcaa 25388121  T
Q  230 ttcta 234  Q
    |||||    
T  25388120 ttcta 25388116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 238
Target Start/End: Complemental strand, 4911014 - 4910943
Alignment:
Q  167 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    |||||||||| ||||||||  ||| ||||||||| |||| ||||||| |  ||| |||||||||||||||||    
T  4911014 atttatgtttggatacatttatgtaaaagtgagtcgaactataaatttgtatgtgaaaatcaattctagaat 4910943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 204
Target Start/End: Original strand, 434163 - 434253
Alignment:
Q  115 aattgattttga-ttgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaa 204  Q
    |||||||||||| |||||| |||| ||||| ||||||||| | || ||| |  |||| ||||| |||| |||||||| |||||||||||||    
T  434163 aattgattttgagttgaatggattatggctaaaagtgagttgcaggtaaaatgatttgtgtttggatatattcgtgtaaaagtgagttgaa 434253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 19601372 - 19601426
Alignment:
Q  108 tgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataa 162  Q
    |||||||||||||||||||||||||||||| |  || | ||||||| ||||||||    
T  19601372 tgacaaaaattgattttgattgaattgattttaactaatagtgagttgaagataa 19601426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 30926790 - 30926828
Alignment:
Q  200 ttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  30926790 ttgaacaataaatttgagtgtaaaaatcaattctagaat 30926828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 34026417 - 34026459
Alignment:
Q  120 attttgattgaattgattctggcttaaagtgagtcgaagataa 162  Q
    ||||||| |||||||||||||||| ||||||||| ||||||||    
T  34026417 attttgagtgaattgattctggctaaaagtgagttgaagataa 34026459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 852623 - 852567
Alignment:
Q  182 cattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    ||||| ||| |||||||||| ||||||| ||| | |||| |||||||||||||||||    
T  852623 cattcatgtaaaagtgagttaaacaatacatttgggtgtaaaaatcaattctagaat 852567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 17225947 - 17225887
Alignment:
Q  178 gatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    ||||||||| ||| ||| |||||||||| ||||||| |  ||| |||||||||||||||||    
T  17225947 gatacattcatgtaaaactgagttgaactataaatttgtatgtaaaaatcaattctagaat 17225887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 106 - 221
Target Start/End: Complemental strand, 33843878 - 33843763
Alignment:
Q  106 gttgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaac 205  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| | |  |||    |||||||||| |||| |||| ||| | ||||||||||||    
T  33843878 gttgacaaaaattgattttgattgaattgattctggctaaaagtgagttggatgtaaagtgatttatgtttggatatattcatgtaatagtgagttgaac 33843779  T
Q  206 aataaattcgagtgtt 221  Q
    ||||||||||||||||    
T  33843778 aataaattcgagtgtt 33843763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 55927749 - 55927820
Alignment:
Q  167 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    |||||||||| ||||||||| ||| ||||||| |||||||||||||| |||||| |  ||||||||||||||    
T  55927749 atttatgtttggatacattcatgtaaaagtgacttgaacaataaatttgagtgtgacgatcaattctagaat 55927820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 4243468 - 4243422
Alignment:
Q  192 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    ||||||||| |||||||||||| |||||| |||||||||||||||||    
T  4243468 aaagtgagtagaacaataaatttgagtgtaaaaatcaattctagaat 4243422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 33844052 - 33844012
Alignment:
Q  198 agttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    |||||||||||||||| ||||||||||||||||| ||||||    
T  33844052 agttgaacaataaatttgagtgttaaaatcaattttagaat 33844012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 8604601 - 8604672
Alignment:
Q  167 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    |||||||||| ||||||||| ||| ||||||  || ||| ||||||| | |||| |||||||||||||||||    
T  8604601 atttatgtttggatacattcatgtaaaagtgcattcaactataaatttgtgtgtgaaaatcaattctagaat 8604672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 48045675 - 48045726
Alignment:
Q  111 caaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataa 162  Q
    |||||||||||||||| | |||||||||||||| ||| ||||| ||||||||    
T  48045675 caaaaattgattttgagtaaattgattctggctaaaactgagttgaagataa 48045726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 2207160 - 2207114
Alignment:
Q  192 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    |||||||||||||| ||||||| ||||||| ||||||||| ||||||    
T  2207160 aaagtgagttgaaccataaattggagtgttgaaatcaattatagaat 2207114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 32818354 - 32818420
Alignment:
Q  172 tgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    ||||| ||||||||| ||| ||||| |||||||| ||||||| | |||  |||||||||||||||||    
T  32818354 tgtttggatacattcatgtaaaagttagttgaactataaatttgtgtgcaaaaatcaattctagaat 32818420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 25319153 - 25319108
Alignment:
Q  168 tttatgtttcgatacattcgtgttaaagtgagttgaacaataaatt 213  Q
    ||||||||||||||||||   || ||||||||||||||||||||||    
T  25319153 tttatgtttcgatacatttacgtaaaagtgagttgaacaataaatt 25319108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 32100373 - 32100336
Alignment:
Q  192 aaagtgagttgaacaataaattcgagtgttaaaatcaa 229  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  32100373 aaagtgagttgaacaataaatttgagtgtaaaaatcaa 32100336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 10185289 - 10185229
Alignment:
Q  178 gatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    ||||||||  ||| |||||||||| ||||||||||| |||||| || ||||||| ||||||    
T  10185289 gatacattaatgtaaaagtgagttaaacaataaatttgagtgtaaagatcaattttagaat 10185229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 237
Target Start/End: Complemental strand, 16552050 - 16551993
Alignment:
Q  178 gatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaa 237  Q
    ||||||||| ||| |||||||||||||| |||||||   |||| ||||||||||||||||    
T  16552050 gatacattcatgtaaaagtgagttgaactataaatt--tgtgtgaaaatcaattctagaa 16551993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 106 - 238
Target Start/End: Complemental strand, 27572029 - 27571897
Alignment:
Q  106 gttgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaac 205  Q
    ||||||||||||||||||||  |||||||||| ||||| |||||||||  ||| ||| |  ||||||| || ||||||||  ||| || ||||||||||     
T  27572029 gttgacaaaaattgattttgggtgaattgattatggctaaaagtgagttaaaggtaaaatgatttatggttggatacatttatgtaaatgtgagttgaat 27571930  T
Q  206 aataaattcgagtgttaaaatcaattctagaat 238  Q
    |||||| | ||||||||||||||||||||||||    
T  27571929 aataaacttgagtgttaaaatcaattctagaat 27571897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 238
Target Start/End: Complemental strand, 45557523 - 45557400
Alignment:
Q  115 aattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattc 214  Q
    |||||||||||| ||||||||||||| || ||||||||| |||| |||    |||| ||||| ||||||||| ||| |||||||||||| | | |||||     
T  45557523 aattgattttgaatgaattgattctgactaaaagtgagttgaaggtaaagtgatttgtgtttggatacattcatgtaaaagtgagttgagctacaaattt 45557424  T
Q  215 gagtgttaaaatcaattctagaat 238  Q
    | |||| ||||||||| |||||||    
T  45557423 gtgtgtaaaaatcaatcctagaat 45557400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 236
Target Start/End: Original strand, 40561678 - 40561806
Alignment:
Q  108 tgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaa 207  Q
    |||||||| |||||||||| |||||||||||| |   ||| ||||| |||  |||    |||||||||| ||||||||| ||| ||||||||||||||||    
T  40561678 tgacaaaagttgattttgagtgaattgattctagtaaaaattgagttgaaagtaaagtgatttatgtttggatacattcatgtaaaagtgagttgaacaa 40561777  T
Q  208 taaattcgagtgttaaaatcaattctaga 236  Q
    || ||| ||||||  |||| |||||||||    
T  40561778 tatatttgagtgtataaattaattctaga 40561806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 218
Target Start/End: Original strand, 33853404 - 33853514
Alignment:
Q  108 tgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaa 207  Q
    ||||||||||||||||| | |||||||||||||||| | ||||||| |||| |||    |||||||||| ||||||||| ||| ||||  || || ||||    
T  33853404 tgacaaaaattgatttttagtgaattgattctggctaagagtgagttgaagctaaagtgatttatgtttggatacattcatgtaaaagcaagctggacaa 33853503  T
Q  208 taaattcgagt 218  Q
    |||||| ||||    
T  33853504 taaatttgagt 33853514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 238
Target Start/End: Original strand, 38123598 - 38123716
Alignment:
Q  120 attttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtg 219  Q
    ||||||| | |||||||| || || ||| ||||| |||| |||   ||||| ||||  || |||||| ||| |||||||||||| ||||||||| |||||    
T  38123598 attttgagtaaattgattatgactaaaattgagttgaaggtaaagtaatttgtgttcggacacattcatgtaaaagtgagttgaccaataaatttgagtg 38123697  T
Q  220 ttaaaatcaattctagaat 238  Q
    | |||||||||||||||||    
T  38123698 taaaaatcaattctagaat 38123716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 238
Target Start/End: Original strand, 22310385 - 22310509
Alignment:
Q  114 aaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaatt 213  Q
    ||||||||||||| || ||||| | |||   ||| ||||| |||||||| |  |||||||||| |||||||||  || ||||||| ||||| ||||||||    
T  22310385 aaattgattttgagtggattgagtttggtaaaaattgagttgaagataaaaagatttatgtttggatacattctcgtaaaagtgaattgaaaaataaatt 22310484  T
Q  214 cgagtgttaaaatcaattctagaat 238  Q
      ||||| ||||| |||||||||||    
T  22310485 taagtgtaaaaattaattctagaat 22310509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 40795969 - 40796035
Alignment:
Q  168 tttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattcta 234  Q
    |||||| || ||||||||| ||| ||||||| ||||| | |||||| ||||||||||||||||||||    
T  40795969 tttatgattggatacattcatgtaaaagtgatttgaatagtaaatttgagtgttaaaatcaattcta 40796035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 234
Target Start/End: Complemental strand, 12306866 - 12306760
Alignment:
Q  130 aattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaa--taaattcgagtgttaaaatc 227  Q
    |||||||||||||| ||||||||| ||||||||    |||||||||| | || |||| ||| ||||||||||||| |   | |||| |||||| ||||||    
T  12306866 aattgattctggctaaaagtgagttgaagataaagtgatttatgtttggctagattcatgtaaaagtgagttgaatatagtgaatttgagtgtaaaaatc 12306767  T
Q  228 aattcta 234  Q
    |||||||    
T  12306766 aattcta 12306760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 41788422 - 41788353
Alignment:
Q  167 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctaga 236  Q
    ||||||||||  |||||||  | | |||||||||||||||  ||||| ||||||||||||||||| ||||    
T  41788422 atttatgtttgtatacattaatataaaagtgagttgaacagcaaatttgagtgttaaaatcaattataga 41788353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 137
Target Start/End: Complemental strand, 45823336 - 45823307
Alignment:
Q  108 tgacaaaaattgattttgattgaattgatt 137  Q
    ||||||||||||||||||||||||||||||    
T  45823336 tgacaaaaattgattttgattgaattgatt 45823307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 40491721 - 40491613
Alignment:
Q  130 aattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaa 229  Q
    |||||||| || || ||||||||| |||| |||    |||||| ||| ||||||||| ||| |||||||||| |||  |||||| | |||| ||| ||||    
T  40491721 aattgattttgactaaaagtgagttgaaggtaaagtgatttatttttggatacattcatgtaaaagtgagttaaactttaaatttgtgtgtaaaagtcaa 40491622  T
Q  230 ttctagaat 238  Q
    |||||||||    
T  40491621 ttctagaat 40491613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 238
Target Start/End: Original strand, 1976788 - 1976916
Alignment:
Q  112 aaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaa 211  Q
    |||||||| |||||| ||||||||||||||||  || ||||| |||| |||  | | |||||||| ||||||||| ||| |||||||||| |||||||||    
T  1976788 aaaaattgtttttgagtgaattgattctggctagaattgagttgaaggtaaagcgacttatgtttggatacattcatgtaaaagtgagttcaacaataaa 1976887  T
Q  212 ttcgagtgt--taaaatcaattctagaat 238  Q
    || ||||||   |||||||||||||||||    
T  1976888 tttgagtgtaaaaaaatcaattctagaat 1976916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 238
Target Start/End: Complemental strand, 44439360 - 44439289
Alignment:
Q  167 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    |||||||||| ||||  ||  ||| |||||||||||||||||||||| ||||||||||||||||| ||||||    
T  44439360 atttatgtttggatatgtttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattttagaat 44439289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 15220840 - 15220886
Alignment:
Q  167 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaatt 213  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||    
T  15220840 atttatgtttggatacattcatgttaaagtgagttgaacaataaatt 15220886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 16013683 - 16013760
Alignment:
Q  167 atttatgtttcgatacattcgtgt------taaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    |||||||||| |||||||||||||      ||||||||||||| ||||||||| |||||| ||||||| |||||||||    
T  16013683 atttatgtttggatacattcgtgtaaactgtaaagtgagttgaccaataaatttgagtgtaaaaatcatttctagaat 16013760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 37420171 - 37420243
Alignment:
Q  166 aatttatgtttcgatacattcgt--gttaaagtgagttgaacaataaattcgagtgttaaaatcaattctaga 236  Q
    |||||||||||| ||| || |||  || ||||||||||||| |||||||| |||||| |||||||||||||||    
T  37420171 aatttatgtttcaatatatacgtaagtaaaagtgagttgaataataaatttgagtgtaaaaatcaattctaga 37420243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 11650668 - 11650706
Alignment:
Q  99 gtttggcgttgacaaaaattgattttgattgaattgatt 137  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  11650668 gttttgcgttgacaaaaattgattttgagtgaattgatt 11650706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 42741058 - 42741012
Alignment:
Q  192 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    ||||||||||| ||| |||||| |||||| |||||||||||||||||    
T  42741058 aaagtgagttggacagtaaatttgagtgtaaaaatcaattctagaat 42741012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 40401621 - 40401666
Alignment:
Q  166 aatttatgtttcgatacattcgtgttaaagtgagttgaacaataaa 211  Q
    ||||||||||| ||||||||| ||| ||||| ||||||||||||||    
T  40401621 aatttatgtttggatacattcatgtaaaagtcagttgaacaataaa 40401666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 3476349 - 3476393
Alignment:
Q  108 tgacaaaaattgattttgattgaattgattctggcttaaagtgag 152  Q
    ||||||||||||||||| | |||||||||||||| | ||||||||    
T  3476349 tgacaaaaattgattttaagtgaattgattctggataaaagtgag 3476393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 4908896 - 4908852
Alignment:
Q  167 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaa 211  Q
    |||||||||| ||||||||| ||||||||||  ||||||||||||    
T  4908896 atttatgtttggatacattcatgttaaagtggattgaacaataaa 4908852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 42982639 - 42982579
Alignment:
Q  178 gatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    ||||||||| ||| ||||||||||| | |||||||| | |||| |||||||||||| ||||    
T  42982639 gatacattcatgtaaaagtgagttgtaaaataaatttgtgtgtaaaaatcaattctggaat 42982579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 14093 - 14164
Alignment:
Q  167 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    |||||||||| ||||||||| ||| ||||||||||||| |||||||| |||||| |||||||||||||||||    
T  14093 atttatgtttggatacattcatgtgaaagtgagttgaaaaataaatttgagtgtaaaaatcaattctagaat 14164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 36302348 - 36302222
Alignment:
Q  110 acaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataataca--atttatgtttcgatacattcgtgttaaagtgagttgaacaa 207  Q
    ||||||||||||||||| ||||||||||| || | ||| ||||| |||||||| | |  ||| |||| | ||| ||||| ||| ||||||||||||||||    
T  36302348 acaaaaattgattttgagtgaattgattccggttaaaattgagttgaagataaaaaatgattaatgtgtggattcattcatgtaaaagtgagttgaacaa 36302249  T
Q  208 taaattcgagtgttaaaatcaattcta 234  Q
    ||||||  |||| ||||||||||||||    
T  36302248 taaatttaagtgctaaaatcaattcta 36302222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 113 - 238
Target Start/End: Original strand, 46853459 - 46853584
Alignment:
Q  113 aaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaat 212  Q
    ||||||||| |||| |||||||||| |||||  |||| ||| |||| |||    ||||||||   |||| |||  ||| |||||||||||||||||||||    
T  46853459 aaaattgatcttgagtgaattgattttggctacaagtaagttgaaggtaaagtgatttatgtcaggatatatttatgtaaaagtgagttgaacaataaat 46853558  T
Q  213 tcgagtgttaaaatcaattctagaat 238  Q
    | ||||||||||||||||||||||||    
T  46853559 ttgagtgttaaaatcaattctagaat 46853584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 51285744 - 51285605
Alignment:
Q  99 gtttggcgttgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtga 198  Q
    |||| ||| ||| ||||||||||||||| |||||| ||| ||||| ||||||||| |||  |||   |||| ||| || ||||||||| ||| |||| |     
T  51285744 gttttgcggtgagaaaaattgattttgagtgaatttattatggctaaaagtgagttgaatgtaaagtaattcatgcttggatacattcatgtaaaagcgg 51285645  T
Q  199 gttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    ||| ||||| ||||| |||||  |||||||||||||||||    
T  51285644 gttaaacaacaaatttgagtgcaaaaatcaattctagaat 51285605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 263
Target Start/End: Original strand, 30301002 - 30301073
Alignment:
Q  192 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttca 263  Q
    |||||| ||||||||||||||| ||||||||||| ||||||||||||       ||||||||||||||||||    
T  30301002 aaagtgggttgaacaataaatttgagtgttaaaaccaattctagaattaaaaaactccaatttctagcttca 30301073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 35264392 - 35264461
Alignment:
Q  169 ttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    |||||||| | ||||||| ||| ||| ||| ||||||||||||||  |||||||||||||||||||||||    
T  35264392 ttatgtttgggtacattcatgtaaaaatgacttgaacaataaatttaagtgttaaaatcaattctagaat 35264461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 40147832 - 40147900
Alignment:
Q  170 tatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    ||||||| ||||||||  ||| |||||||||||||  |||||||| |||||| ||||||||||||||||    
T  40147832 tatgtttggatacattaatgtaaaagtgagttgaatgataaattcaagtgttgaaatcaattctagaat 40147900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 35058443 - 35058396
Alignment:
Q  192 aaagtgagttgaacaataa-attcgagtgttaaaatcaattctagaat 238  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  35058443 aaagtgagttgaacaataatatttgagtgttaaaatcaattctagaat 35058396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 31708223 - 31708289
Alignment:
Q  172 tgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    ||||| ||||||||| ||| |||||||||||||  ||||||| | |||||| |||||||||||||||    
T  31708223 tgtttggatacattcatgtaaaagtgagttgaattataaatttgtgtgttagaatcaattctagaat 31708289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 213
Target Start/End: Complemental strand, 5407061 - 5406964
Alignment:
Q  112 aaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaa 211  Q
    ||||||||||||||| |||||||||||| ||| ||| ||||| |||| ||    || |||||||| ||||||||| ||| ||||||| ||||| | ||||    
T  5407061 aaaaattgattttgagtgaattgattctagctaaaattgagttgaaggta----aagttatgtttggatacattcatgtaaaagtgatttgaagagtaaa 5406966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 27266773 - 27266844
Alignment:
Q  167 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    |||||||||| ||||  ||| ||| ||||| |||||||||||||||| |||||| ||||| |||||| ||||    
T  27266773 atttatgtttagatattttcatgtaaaagttagttgaacaataaatttgagtgtaaaaattaattcttgaat 27266844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 37335025 - 37335084
Alignment:
Q  179 atacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    |||||||| | | ||| ||||||||||||| ||||| ||||| |||||||||||||||||    
T  37335025 atacattcatataaaaatgagttgaacaatgaattcaagtgtaaaaatcaattctagaat 37335084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 231
Target Start/End: Original strand, 40136096 - 40136214
Alignment:
Q  112 aaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaa 211  Q
    ||||||||||||||| |||||| |||||||| |||||||| | |||  ||| | | ||| |||||  |||||||  ||| ||| |||||| |||||| ||    
T  40136096 aaaaattgattttgaatgaattaattctggc-taaagtgacttgaatgtaaaatattttttgttttaatacatttttgtaaaaatgagttcaacaatgaa 40136194  T
Q  212 ttcgagtgttaaaatcaatt 231  Q
    || || ||||||||||||||    
T  40136195 tttgattgttaaaatcaatt 40136214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 238
Target Start/End: Complemental strand, 3776667 - 3776557
Alignment:
Q  128 tgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatc 227  Q
    |||||||||||||||| ||| ||||| |||  |||    ||||||| || ||||||||  ||| |||||||||| | ||| ||||| |||||| |||||     
T  3776667 tgaattgattctggctaaaattgagttgaatgtaaagtgatttatgcttggatacattgatgtaaaagtgagttcagcaacaaatttgagtgtaaaaatt 3776568  T
Q  228 aattctagaat 238  Q
    |||||||||||    
T  3776567 aattctagaat 3776557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 35253446 - 35253516
Alignment:
Q  167 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaa 237  Q
    |||||| ||| || ||| || ||| |||||||||||||  ||||||| |||||| ||||||||||||||||    
T  35253446 atttatatttggaaacaatcatgtaaaagtgagttgaatgataaatttgagtgtaaaaatcaattctagaa 35253516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 29475364 - 29475425
Alignment:
Q  167 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatca 228  Q
    |||||||||| ||||| ||  ||| ||| |||||||||||| ||||| ||||||||||||||    
T  29475364 atttatgttttgatacgtttatgtcaaactgagttgaacaaaaaatttgagtgttaaaatca 29475425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 228
Target Start/End: Complemental strand, 1233465 - 1233350
Alignment:
Q  113 aaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaat 212  Q
    |||||||||||| |||||||| ||| | | | ||  |||||  ||| ||| | ||||||||||| ||||||||| ||| |||||||||| ||||||||||    
T  1233465 aaaattgattttcattgaattaattttagttaaacatgagtttaaggtaaaataatttatgtttagatacattcatgtgaaagtgagttcaacaataaat 1233366  T
Q  213 tcgagtgttaaaatca 228  Q
    | |||||| |||||||    
T  1233365 ttgagtgtaaaaatca 1233350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 48548993 - 48549062
Alignment:
Q  167 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    |||||||||| ||||||||  ||| |||||||||||||||||||||  |||| | |||||||||||||||||    
T  48548993 atttatgttttgatacatttatgtaaaagtgagttgaacaataaat--gagtttaaaaatcaattctagaat 48549062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 28287340 - 28287382
Alignment:
Q  192 aaagtgagttgaacaataaattcgagtgttaaaatcaattcta 234  Q
    ||||| |||||||||||||||| ||||||||||||||||||||    
T  28287340 aaagttagttgaacaataaatttgagtgttaaaatcaattcta 28287382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 213522 - 213587
Alignment:
Q  173 gtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    |||| ||| ||||| ||| |||||||||||||||| ||||| |||| | |||||||||||||||||    
T  213522 gtttggatgcattcatgtaaaagtgagttgaacaacaaatttgagtttaaaaatcaattctagaat 213587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 1514450 - 1514385
Alignment:
Q  166 aatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaatt 231  Q
    ||||| ||||| ||||||||| ||| ||| |||||||||||||||||| | |||| ||||||||||    
T  1514450 aatttgtgtttggatacattcatgtaaaaatgagttgaacaataaatttgtgtgtaaaaatcaatt 1514385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 209
Target Start/End: Original strand, 6932104 - 6932205
Alignment:
Q  108 tgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaa 207  Q
    |||||||| |||||||||| ||||||||||||| || ||||||||| |||  ||| |  || |  |||| ||| ||||||||| || |||||||||||||    
T  6932104 tgacaaaatttgattttgaatgaattgattctgactaaaagtgagttgaatgtaaaatgatcttcgtttggattcattcgtgtaaaggtgagttgaacaa 6932203  T
Q  208 ta 209  Q
    ||    
T  6932204 ta 6932205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 20026168 - 20026212
Alignment:
Q  192 aaagtgagttgaacaataaattcgagtgttaaaatcaattctaga 236  Q
    ||||||| |||||||||||||| ||||||| ||||||||||||||    
T  20026168 aaagtgaattgaacaataaatttgagtgttcaaatcaattctaga 20026212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 24587993 - 24587949
Alignment:
Q  192 aaagtgagttgaacaataaattcgagtgttaaaatcaattctaga 236  Q
    ||||||||||||| |||||||| ||||||||||||||||| ||||    
T  24587993 aaagtgagttgaataataaatttgagtgttaaaatcaattataga 24587949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 52263625 - 52263689
Alignment:
Q  166 aatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaat 230  Q
    ||||||||||| ||||||||  ||| ||| |||||| ||||||||||| |||||| |||||||||    
T  52263625 aatttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaat 52263689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 238
Target Start/End: Complemental strand, 4458492 - 4458421
Alignment:
Q  167 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    |||||| ||| |||||||||  || ||||||| ||| ||||||||||| |||||||||  ||||||||||||    
T  4458492 atttatatttggatacattcaggtaaaagtgaattgtacaataaattcaagtgttaaatccaattctagaat 4458421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 238
Target Start/End: Complemental strand, 34915172 - 34915101
Alignment:
Q  167 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    ||||||||||  |||||||| ||| |||||||||||||  ||||| | | |||||| |||||||||||||||    
T  34915172 atttatgtttgaatacattcatgtaaaagtgagttgaattataaaatggtgtgttagaatcaattctagaat 34915101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 7790646 - 7790692
Alignment:
Q  192 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    |||||||||||||||||||||| | |||| |||||||||| ||||||    
T  7790646 aaagtgagttgaacaataaatttgtgtgtaaaaatcaattatagaat 7790692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 8382047 - 8382002
Alignment:
Q  192 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaa 237  Q
    |||||||||||||||||||| | || ||| ||||||||||||||||    
T  8382047 aaagtgagttgaacaataaacttgaatgtaaaaatcaattctagaa 8382002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 47892393 - 47892438
Alignment:
Q  193 aagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    |||||||||||||||||  ||  |||||||||||||||||||||||    
T  47892393 aagtgagttgaacaatatgttttagtgttaaaatcaattctagaat 47892438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 3016265 - 3016197
Alignment:
Q  170 tatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    ||||||| ||||||||| ||| ||||||||||||||  ||||||   |||| || ||||||||||||||    
T  3016265 tatgtttggatacattcatgtaaaagtgagttgaaccgtaaatttatgtgtaaacatcaattctagaat 3016197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 10324928 - 10324988
Alignment:
Q  178 gatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    ||||||||  ||| |||||||||  ||||||||||| |||||| |||||||||| ||||||    
T  10324928 gatacattaatgtaaaagtgagtataacaataaatttgagtgtaaaaatcaattatagaat 10324988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 17284171 - 17284131
Alignment:
Q  198 agttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    |||||||||||||||| |||||| |||||||||| ||||||    
T  17284171 agttgaacaataaatttgagtgtaaaaatcaattttagaat 17284131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 238
Target Start/End: Complemental strand, 30557608 - 30557539
Alignment:
Q  167 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    |||| ||||| ||||||||| | | |||||||||||||| |||||||   |||| |||||||||||||||||    
T  30557608 atttgtgtttggatacattcatataaaagtgagttgaactataaatt--tgtgtgaaaatcaattctagaat 30557539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 30850393 - 30850445
Alignment:
Q  182 cattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattcta 234  Q
    ||||| ||| |||||||||||||| ||||||| |  |||||||||||||||||    
T  30850393 cattcatgtaaaagtgagttgaactataaatttgtatgttaaaatcaattcta 30850445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 35961501 - 35961437
Alignment:
Q  140 ggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaa 204  Q
    |||| ||||||||| |||| ||| |  ||||||||||| |||||||| ||| |||||||||||||    
T  35961501 ggctaaaagtgagttgaaggtaaaatgatttatgtttctatacattcatgtaaaagtgagttgaa 35961437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 52339719 - 52339775
Alignment:
Q  179 atacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctag 235  Q
    |||||||||||| || |||| |||||||||||||| |||| | ||| ||||||||||    
T  52339719 atacattcgtgtaaatgtgacttgaacaataaatttgagtataaaactcaattctag 52339775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 234
Target Start/End: Original strand, 16972005 - 16972110
Alignment:
Q  129 gaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatca 228  Q
    |||||||||| | || ||||||||| |||| ||| |  |||| |||||  |||||||| ||| ||||||| |||||||||||||| | || | |||||||    
T  16972005 gaattgattcagactaaaagtgagttgaaggtaaaatgatttgtgtttgaatacattcatgtaaaagtgatttgaacaataaatttgtgtttaaaaatca 16972104  T
Q  229 attcta 234  Q
    ||||||    
T  16972105 attcta 16972110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 32927998 - 32927931
Alignment:
Q  167 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattcta 234  Q
    |||| ||||| ||||||||| ||| |||||||||||||| ||||||| | |||| ||||| |||||||    
T  32927998 atttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtgtgtaaaaatgaattcta 32927931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 238
Target Start/End: Complemental strand, 35495366 - 35495295
Alignment:
Q  167 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    |||||||||| |||||||||   | ||||||| |||||||||||||| |||| | |||||||||| ||||||    
T  35495366 atttatgtttggatacattcaaataaaagtgatttgaacaataaatttgagtataaaaatcaattatagaat 35495295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 13384658 - 13384704
Alignment:
Q  192 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    |||||||||||||| ||||||| | |||| |||||||||||||||||    
T  13384658 aaagtgagttgaactataaatttgtgtgtgaaaatcaattctagaat 13384704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 238
Target Start/End: Complemental strand, 32767495 - 32767422
Alignment:
Q  167 atttatgtttcgatacattc--gtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    |||||||||| |||||||||  |||| ||||||||||||||||||||||  ||||| ||| ||| |||| ||||    
T  32767495 atttatgtttggatacattcatgtgtaaaagtgagttgaacaataaatttaagtgtaaaagtcagttctcgaat 32767422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 38386476 - 38386430
Alignment:
Q  113 aaaattgattttgattgaattgattctggcttaaagtgagtcgaaga 159  Q
    ||||||||||||||| ||||||||||||||| ||||| ||| |||||    
T  38386476 aaaattgattttgatagaattgattctggctaaaagtaagttgaaga 38386430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 209
Target Start/End: Complemental strand, 2778677 - 2778577
Alignment:
Q  109 gacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaat 208  Q
    ||||||||||||||||   |||| ||||||| ||| ||||||||| ||||||||    |||||| ||| |||| |||  ||  |||||||||||||||||    
T  2778677 gacaaaaattgattttatgtgaactgattctagctaaaagtgagttgaagataaagtgatttatttttggataaatttatgcaaaagtgagttgaacaat 2778578  T
Q  209 a 209  Q
    |    
T  2778577 a 2778577  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 238
Target Start/End: Original strand, 26100088 - 26100196
Alignment:
Q  130 aattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaa 229  Q
    ||||||||||| || |||  |||| |||| |||  | |||| ||||| ||| ||||  ||| |||||||||||||| ||||||| | |||| ||||||||    
T  26100088 aattgattctgactaaaaacgagttgaaggtaaagctatttgtgtttggatgcatttatgtaaaagtgagttgaaccataaatttgtgtgtaaaaatcaa 26100187  T
Q  230 ttctagaat 238  Q
    || ||||||    
T  26100188 ttatagaat 26100196  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 136
Target Start/End: Complemental strand, 43024991 - 43024963
Alignment:
Q  108 tgacaaaaattgattttgattgaattgat 136  Q
    |||||||||||||||||||||||||||||    
T  43024991 tgacaaaaattgattttgattgaattgat 43024963  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 238
Target Start/End: Complemental strand, 15368632 - 15368508
Alignment:
Q  113 aaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaat 212  Q
    |||||||||||||| |||||||||||||||| ||| ||||| ||||  ||    ||||||||||  |||||| | ||| ||||||| |||||||| | ||    
T  15368632 aaaattgattttgagtgaattgattctggctgaaattgagttgaagggaa-gtgatttatgtttgaatacatccatgtaaaagtgacttgaacaacatat 15368534  T
Q  213 tcgagtgttaaaatcaattctagaat 238  Q
    | |||||| || ||||||| ||||||    
T  15368533 ttgagtgtaaagatcaattatagaat 15368508  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 8591587 - 8591519
Alignment:
Q  167 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctag 235  Q
    |||||| ||| ||||||||| | | |||||||||||||||| ||||| |||||  ||||||||||||||    
T  8591587 atttatatttggatacattcctataaaagtgagttgaacaacaaatttgagtgaaaaaatcaattctag 8591519  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 219
Target Start/End: Original strand, 35138967 - 35139054
Alignment:
Q  132 ttgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtg 219  Q
    ||||||||| || ||| ||||| |||| ||| |  |||||||||  ||||||||| | | |||||||||||||||||||||| |||||    
T  35138967 ttgattctgtctaaaattgagttgaaggtaaaatgatttatgttcagatacattcatatgaaagtgagttgaacaataaatttgagtg 35139054  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 36640042 - 36639972
Alignment:
Q  168 tttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 238  Q
    ||||||||| ||||  ||| ||| |||||||| |||||| |||||| |||||| |||| ||||||||||||    
T  36640042 tttatgttttgataggttcatgtaaaagtgaggtgaacattaaatttgagtgtaaaaaacaattctagaat 36639972  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 228
Target Start/End: Complemental strand, 7925468 - 7925431
Alignment:
Q  191 taaagtgagttgaacaataaattcgagtgttaaaatca 228  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  7925468 taaagtgagttgaacaataaatttgagtgtaaaaatca 7925431  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 9952555 - 9952600
Alignment:
Q  108 tgacaaaaattgattttgattgaattgattctggcttaaagtgagt 153  Q
    ||||||||||||||||||| |||||||||| ||| | |||||||||    
T  9952555 tgacaaaaattgattttgaatgaattgattatggataaaagtgagt 9952600  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 9185020 - 9185064
Alignment:
Q  193 aagtgagttgaacaataaattcgagtgttaaaatcaattctagaa 237  Q
    ||||||||||||| |||||||  | ||||||||||||||||||||    
T  9185020 aagtgagttgaacgataaatttaaatgttaaaatcaattctagaa 9185064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 37886019 - 37886063
Alignment:
Q  169 ttatgtttcgatacattcgtgttaaagtgagttgaacaataaatt 213  Q
    ||||||||  ||||||| |||| ||||||||||||||||||||||    
T  37886019 ttatgtttgaatacatttgtgtaaaagtgagttgaacaataaatt 37886063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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