View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20268_low_9 (Length: 231)
Name: NF20268_low_9
Description: NF20268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20268_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 52953632 - 52953433
Alignment:
| Q |
17 |
caactaaaaccactccaattaacagttttgttactaacaggcttccaaagtgaagttggaaaaggatgaagataatttaccttagaagaaacagatttag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52953632 |
caactaaaaccactccaattaacagttttgttactaacaggcttccaaagtgaagttggaaaaggatgaagataatttaccttagaagaaacagatttag |
52953533 |
T |
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| Q |
117 |
caaaacaccttcttctaggtaaaggctcacaccttttcaaaatcaatttctgtgcaaaactccaatcatcttgacaatttccaaacactttgtaattcat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52953532 |
caaaacaccttcttctaggtaaaggctcacaccttttcgaaatcaatttctgtgcaaaactccaatcatcttgacaatttccaaacactttgtaattcat |
52953433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 31903894 - 31904093
Alignment:
| Q |
17 |
caactaaaaccactccaattaacagttttgttactaacaggcttccaaagtgaagttggaaaaggatgaagataatttaccttagaagaaacagatttag |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31903894 |
caactaaaaccactccaattaacagttttgttactaacaggtttccaaagtgaagttggaaaaggatgaagataatttaccttagaagaaacagatttag |
31903993 |
T |
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| Q |
117 |
caaaacaccttcttctaggtaaaggctcacaccttttcaaaatcaatttctgtgcaaaactccaatcatcttgacaatttccaaacactttgtaattcat |
216 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31903994 |
caaaacaccttcttcttggtaaaggctcacaccctttcaaaatcaatttctgagcataactccaatcatcttgacaatttccaaatactttgtaattcat |
31904093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 31922029 - 31922101
Alignment:
| Q |
17 |
caactaaaaccactccaattaacagttttgttactaacaggcttccaaagtgaagttggaaaaggatgaagat |
89 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31922029 |
caactaaaaccactccaattaacagttttgttactaacaggtttccaaagtgaagttggaaaaggatgaagat |
31922101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 31673645 - 31673573
Alignment:
| Q |
17 |
caactaaaaccactccaattaacagttttgttactaacaggcttccaaagtgaagttggaaaaggatgaagat |
89 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
31673645 |
caactaaaaccactccaattaacagttttgttgctaacaggtttccaaagtgaagttggaaaaggatgaagat |
31673573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 186
Target Start/End: Complemental strand, 7760422 - 7760340
Alignment:
| Q |
104 |
gaaacagatttagcaaaacaccttcttctaggtaaaggctcacaccttttcaaaatcaatttctgtgcaaaactccaatcatc |
186 |
Q |
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||||||| ||| | |||||||||||||||||||||||||||||||| ||| || |||| |||||| || | |||||||||||| |
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| T |
7760422 |
gaaacagtttttgaaaaacaccttcttctaggtaaaggctcacacccttttaagatcagtttctgagctacactccaatcatc |
7760340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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