View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20269_high_17 (Length: 254)
Name: NF20269_high_17
Description: NF20269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20269_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 52 - 239
Target Start/End: Complemental strand, 43446670 - 43446479
Alignment:
| Q |
52 |
ctaatataatgaacatgcatgttgttactacttcatgcagtagccagtctcggtcatagaaaatcaatccaatggttcttatttatgtagtgtaatttga |
151 |
Q |
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| T |
43446670 |
ctaatataatgaacatgcatgttgttactacttcatgcagtagccagtctcggtcatagaaaatcaatccaatggttcttatttatgtagtgtaatttga |
43446571 |
T |
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| Q |
152 |
caaaattcacacagttcaatcgcaaccgtttatttttaatcgcacgatcg--aatagttactgtttg--acagtaactccgtagaatctatt |
239 |
Q |
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| T |
43446570 |
caaaattcacacagttcaatcgcaaccgtttatttttaatcgcacgatcgacaatagttactgtttgacacagtaactccgtagaatctatt |
43446479 |
T |
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