View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20269_high_2 (Length: 606)
Name: NF20269_high_2
Description: NF20269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20269_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 558; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 15 - 588
Target Start/End: Original strand, 35850309 - 35850882
Alignment:
| Q |
15 |
cataggggagtaccaaggaaatatgggttaatcaaaacaaacacgtatgtatgtgtgtattacttgatgtcctgtttttaatgaaatagggttcaaagct |
114 |
Q |
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| T |
35850309 |
cataggggagtaccaaggaaatatgggttaatcaaaacacacacgtatgtatgtgtgtattacttgatgtcctgtttttaatggaatagggttcaaagct |
35850408 |
T |
|
| Q |
115 |
ctaatgcaaacaaaacagtcaacagtatataaataaaaaattaacctaagtaggtagaagcataatacctaaggcatctcgatgcaatcttcgatccctc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35850409 |
ctaatgcaaacaaaacagtcaacagtatataaataaaaaattaacctaagtaggtagaagcataataccttaggcatctcgatgcaatcttcgatccctc |
35850508 |
T |
|
| Q |
215 |
aaatgcaagatgttcaagatgacgtctcaaagcacgcattaaagaattatgaacagcatcaagcagcgtattaggaacccgacagttaagggcaccgacg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35850509 |
aaatgcaagatgttcaagatgacgtctcaaagcacgcattaaagaattatgaacagcatcaagcagcgtattaggaacccgacagttaagggcaccgacg |
35850608 |
T |
|
| Q |
315 |
aaatcatccaaactaaacggataaagaaacaatcgaatactgaacgagcgtaagaatccatataccgaaaacaagtacgaaacatacttctctggcacac |
414 |
Q |
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| T |
35850609 |
aaatcatccaaactaaacggataaagaaacaattgaatactgaacgagcgtaagaatccatataccgaaaacaagtacgaaacatacttctctggcacac |
35850708 |
T |
|
| Q |
415 |
caatagttccagaagacggcggcaactctaacggtggcggcaattctaatgccacaggcaattcaaccggcgtctcagcatcagaacaggaatccctaga |
514 |
Q |
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| T |
35850709 |
caatagttccagaagacggcggcaactctaacggtggcggcaattctaatgccacaggcaattcaaccggcgtctcagcatcagaacaggaatccctaga |
35850808 |
T |
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| Q |
515 |
atcatcgtccatcacatcttgtgattcctcttgatcttccacattcaattcactcgattcttcaataatcttat |
588 |
Q |
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| T |
35850809 |
atcatcgtccatcacatcttgtgattcctcttgatcttccacattcaattcactcgattcttcaataatcttat |
35850882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 86 - 588
Target Start/End: Original strand, 35840766 - 35841265
Alignment:
| Q |
86 |
ctgtttttaatgaaatagggttcaaagctctaatgcaaacaaaacagtcaacagtatataaataaaaaattaacctaagtaggtagaagcataataccta |
185 |
Q |
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| T |
35840766 |
ctgtttttaatggaatagagtttagagctctaatgtacacaaaacagtcaacaatata---atcataaattaacctgaggaggaagaagcataataccta |
35840862 |
T |
|
| Q |
186 |
aggcatctcgatgcaatcttcgatccctcaaatgcaagatgttcaagatgacgtctcaaagcacgcattaaagaattatgaacagcatcaagcagcgtat |
285 |
Q |
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| T |
35840863 |
aggcattgagatgcaaccgttgatccctcagatgcaagatgttcaagatgacgtctcagagcacgcattaaagaattatgaacagcatcaaccaacgtat |
35840962 |
T |
|
| Q |
286 |
taggaacccgacagttaagggcaccgacgaaatcatccaaactaaacggataaagaaacaatcgaatactgaacgagcgtaagaatccatataccgaaaa |
385 |
Q |
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| T |
35840963 |
ttggaactcgacagttaagagccccgacgaaatcatccaaactaaacggataaagaaacaatcgaatactgaatgatcgtaagaatccatataccgaaaa |
35841062 |
T |
|
| Q |
386 |
caagtacgaaacatacttctctggcacaccaatagttccagaagacggcggcaactctaacggtggcggcaattctaatgccacaggcaattcaaccggc |
485 |
Q |
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| T |
35841063 |
caagtacgaaacatacttctccggcacaccaatagttcctgaagacggcggtaactccaaaggcggcgacaattctgatgccaccagcaattcaaccggt |
35841162 |
T |
|
| Q |
486 |
gtctcagcatcagaacaggaatccctagaatcatcgtccatcacatcttgtgattcctcttgatcttccacattcaattcactcgattcttcaataatct |
585 |
Q |
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|||||||||| ||||| |||||||||||||||||||||| |||||| |||| ||||||||||||||| |||||||||| || |||||||||||||||| |
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| T |
35841163 |
atctcagcatccgaacacaaatccctagaatcatcgtccataacatctcgtgaatcctcttgatcttccgcattcaattctctagattcttcaataatct |
35841262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 44384786 - 44384843
Alignment:
| Q |
15 |
cataggggagtaccaaggaaatatgggttaatcaaaacaaacacgtatgtatgtgtgt |
72 |
Q |
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||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||| |
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| T |
44384786 |
cataggggagtaccaagagaatatgggttgatcaaaacacacacgtatgtatgtgtgt |
44384843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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