View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20269_high_7 (Length: 386)
Name: NF20269_high_7
Description: NF20269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20269_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 47 - 375
Target Start/End: Complemental strand, 42316339 - 42316004
Alignment:
| Q |
47 |
atgtttatatgggcacattagtgccactaagaatcata------actgatataagatgttatcattgtaatgtattttagtcaagtcaagaccctacctt |
140 |
Q |
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| T |
42316339 |
atgtttatatgggcacattaatgccaccaagaatcatatccagaactgata--agatgttatcattgtaatgtattttagtcaagtcaagaccctacctt |
42316242 |
T |
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| Q |
141 |
catattcaatttaggcctatatataactttgttcatataagatgttagagatcatttctaacannnnnnnnnnnn---actgaaaaacttgtaacannnn |
237 |
Q |
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| T |
42316241 |
catattcaatttaggcctatatataactttgttcatataagatgttagagatcatttctaacatttgtttttttttttactgaaaaacttgtaacatttt |
42316142 |
T |
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| Q |
238 |
nnnnnacttgagcttcactgcaatagtactcataactctatgctttccatttgaccacaataattccccaaaaacataatccattgtagcatcaccattt |
337 |
Q |
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| T |
42316141 |
tttttacttgagcttcactgcaatagtactcataactctatgctttccatttgaccacaataattccccaaaaacataatccattgtagcatcaccattt |
42316042 |
T |
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| Q |
338 |
tccattgctttcatcacaataaccttgaatgatttctt |
375 |
Q |
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| T |
42316041 |
tccattgctttcatcacaataaccttgaatgatttctt |
42316004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 42316425 - 42316376
Alignment:
| Q |
1 |
tcttggctattatatttacctttgataactcactttggtaacgaacatgt |
50 |
Q |
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| T |
42316425 |
tcttggctattatatttacctttgataactcactttggtaacgaacatgt |
42316376 |
T |
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