View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20269_high_8 (Length: 365)
Name: NF20269_high_8
Description: NF20269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20269_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 9 - 349
Target Start/End: Original strand, 21097776 - 21098116
Alignment:
| Q |
9 |
gaagaatatgctcttgtattccagggtatagaatgaaaaatcctaatgattggtcttatggttgtgaacctatgtttgatttcacttgcaataaaagtga |
108 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21097776 |
gaagaaaatgctcttgtattccagggtatagaatgaacaatcctaatgattggtcttatggttgtgaacctatgtttgatttcacttgcaataaaagtga |
21097875 |
T |
|
| Q |
109 |
gtcaacatttttagagataaaaaatgttgagttttatggctatgattttcattatattgaaatttgtaactatagtgcttgtttggatttatgcatacaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21097876 |
gtcaacatttttagagataaaaaatgttgagttttatggctatgattttcattatattgaaatttgtaactatagtgcttgtttggatttatgcatacaa |
21097975 |
T |
|
| Q |
209 |
gattgtaattgcaaagcatttcaacactcatattgggagaaaaaaggcttgtataggtgttttacaaaaacacaattgcaaaatggaaggttttatccga |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
21097976 |
gattgtaattgcaaagcatttcaacactcatattgggagaaaaaaggcttgtataggtgttttacaaaaacacaattgcaaaatggaaggttttatccaa |
21098075 |
T |
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| Q |
309 |
gctttaaaggatcgacgtacttgagattgcctaaaggtagt |
349 |
Q |
| |
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| T |
21098076 |
gctttaaaggatcgacgtacttgagattgcctaaaggtagt |
21098116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 9 - 298
Target Start/End: Original strand, 21107395 - 21107684
Alignment:
| Q |
9 |
gaagaatatgctcttgtattccagggtatagaatgaaaaatcctaatgattggtcttatggttgtgaacctatgtttgatttcacttgcaataaaagtga |
108 |
Q |
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|||||| ||| ||||||||||||||||||||| |||| || | || ||||||||||||||||||||| |||||||||||||| |||||||||| |||||| |
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| T |
21107395 |
gaagaaaatgttcttgtattccagggtatagagtgaagaaccatagtgattggtcttatggttgtgagcctatgtttgattttacttgcaatagaagtga |
21107494 |
T |
|
| Q |
109 |
gtcaacatttttagagataaaaaatgttgagttttatggctatgattttcattatattgaaatttgtaactatagtgcttgtttggatttatgcatacaa |
208 |
Q |
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||| || ||||| ||||| |||||||||||||||||||||||| |||||||| || || ||||||||||| ||||| | | || ||| || || |
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| T |
21107495 |
gtctaccttttttgagatggtaaatgttgagttttatggctatgacattcattatgttcctatgagtaactatagttcttgtgagaaattgtgcttagaa |
21107594 |
T |
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| Q |
209 |
gattgtaattgcaaagcatttcaacactcatattgggagaaaaaaggcttgtataggtgttttacaaaaacacaattgcaaaatggaagg |
298 |
Q |
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||||||||||| |||| |||||| || | | ||| ||||||||| |||| ||||| ||||||||||||||||| |||||||||| |
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| T |
21107595 |
gattgtaattgtaaaggatttcagtacggttttggggtattaaaaggcttttataagtgttatacaaaaacacaattgcgaaatggaagg |
21107684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 21112469 - 21112365
Alignment:
| Q |
16 |
atgctcttgtattccagggtatagaatgaaaaatcctaatgattggtcttatggttgtgaacctatgtttgatttcacttgcaataaaagtgagtcaaca |
115 |
Q |
| |
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|||||||||| | || ||||||| |||||| || | |||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||| || |
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| T |
21112469 |
atgctcttgtttgccggggtataaaatgaagaaccataatgattggtcttatggatgtgaacctacgtttgattttacttgcaataaaagtgagtctacc |
21112370 |
T |
|
| Q |
116 |
ttttt |
120 |
Q |
| |
|
||||| |
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|
| T |
21112369 |
ttttt |
21112365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 18659591 - 18659486
Alignment:
| Q |
16 |
atgctcttgtattccagggtatagaatgaaaaatcctaatgattggtcttatggttgtgaacctatgtttgatttcacttgcaataaaagtgagtcaaca |
115 |
Q |
| |
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|||||||||| | |||||||||| | |||| || | |||||||| |||| |||||||||||||||||||||||| ||||| |||| ||||||||| || |
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| T |
18659591 |
atgctcttgtttgccagggtataaagtgaagaaccataatgatttctcttctggttgtgaacctatgtttgattttacttgtaatagaagtgagtctacc |
18659492 |
T |
|
| Q |
116 |
ttttta |
121 |
Q |
| |
|
|||||| |
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|
| T |
18659491 |
ttttta |
18659486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 21131429 - 21131324
Alignment:
| Q |
16 |
atgctcttgtattccagggtatagaatgaaaaatcctaatgattggtcttatggttgtgaacctatgtttgatttcacttgcaataaaagtgagtcaaca |
115 |
Q |
| |
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|||||||||| | ||||| |||| | |||| || | || ||||||||||||||||||||||||| |||||||||| |||||||||| |||||| || || |
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| T |
21131429 |
atgctcttgtttgccaggatataaagtgaagaaccatagtgattggtcttatggttgtgaacctctgtttgattttacttgcaatagaagtgaatctact |
21131330 |
T |
|
| Q |
116 |
ttttta |
121 |
Q |
| |
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|||||| |
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| T |
21131329 |
ttttta |
21131324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 21123863 - 21123758
Alignment:
| Q |
16 |
atgctcttgtattccagggtatagaatgaaaaatcctaatgattggtcttatggttgtgaacctatgtttgatttcacttgcaataaaagtgagtcaaca |
115 |
Q |
| |
|
|||||||||| | || ||||||| | |||| || | || ||||| |||| |||||||||||| ||||||||||| |||||||||| ||||||||| || |
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| T |
21123863 |
atgctcttgtttgccggggtataaagtgaagaaccatagtgatttctcttctggttgtgaacccatgtttgattttacttgcaatagaagtgagtctacc |
21123764 |
T |
|
| Q |
116 |
ttttta |
121 |
Q |
| |
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|||||| |
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|
| T |
21123763 |
ttttta |
21123758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 39131343 - 39131397
Alignment:
| Q |
52 |
taatgattggtcttatggttgtgaacctatgtttgatttcacttgcaataaaagt |
106 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||||||||| |||| |
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| T |
39131343 |
taatgattggtcttatggttgtgagcctatgtttgattttacttgcaatagaagt |
39131397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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