View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20269_low_1 (Length: 638)
Name: NF20269_low_1
Description: NF20269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20269_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 603; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 22 - 624
Target Start/End: Original strand, 10378587 - 10379189
Alignment:
| Q |
22 |
gcgtacacttatgccacatttcaaagagaaaatgaaactaacgaagggttccggaaagcctgcaaagcactctgggagtccctctccaccaaaagatgac |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10378587 |
gcgtacacttatgccacatttcaaagagaaaatgaaactaacgaagggttccggaaagcctgcaaagcactctgggagtccctctccaccaaaagatgac |
10378686 |
T |
|
| Q |
122 |
gcagatggtgttgaatggcaaattccagaaccaacacaaagccaaataactcagactcaaaaactgatttttgacccaaattgtaagaaaaacaacccaa |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10378687 |
gcagatggtgttgaatggcaaattccagaaccaacacaaagccaaataactcagactcaaaaactgatttttgacccaaattgtaagaaaaacaacccaa |
10378786 |
T |
|
| Q |
222 |
aaaagatcctcgataatcacgaaaaatgccaccacaagcagccaagccatcaacaactgaaccatccaaaatcaactacactaaggaatgtgttgaagta |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10378787 |
aaaagatcctcgataatcacgaaaaatgccaccacaagcagccaagccatcaacaactgaaccatccaaaatcaactacactaaggaatgtgttgaagta |
10378886 |
T |
|
| Q |
322 |
cagtccgaaatctttcttcttcctgatgacattcttgaattgtgtttgaattgtcttccatttgaaagtctcaagaatgttaggcttgcttgcaagaatt |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10378887 |
cagtccgaaatctttcttcttcctgatgacattcttgaattgtgtttgaattgtcttccatttgaaagtctcaagaatgttaggcttgcttgcaagaatt |
10378986 |
T |
|
| Q |
422 |
ggagttccttccttactaccgagagaatccttcaaataaaggatactagatgccaaaatctatggttgtttgtgtttggtgctctcatacaacccttttc |
521 |
Q |
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| T |
10378987 |
ggagttccttccttactaccgagagaatccttcaaataaaggatactagatgccaaaatctatggttgtttgtgtttggtgctctcatacaacccttttc |
10379086 |
T |
|
| Q |
522 |
tgatttagattatcatgttaacatgatacatgcacttgatctctgttgtgtcaatggcatagtatagatgctgacattctcaaaggaaggtccatgttct |
621 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10379087 |
tgatttagattatcatgttaacatgatacatgcacttgatctctgttgtgtcaatggcatagtatagatgctgacattctcaaaggaaggtccatgttct |
10379186 |
T |
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| Q |
622 |
ctg |
624 |
Q |
| |
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||| |
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| T |
10379187 |
ctg |
10379189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 297 - 460
Target Start/End: Original strand, 10367337 - 10367500
Alignment:
| Q |
297 |
ctacactaaggaatgtgttgaagtacagtccgaaatctttcttcttcctgatgacattcttgaattgtgtttgaattgtcttccatttgaaagtctcaag |
396 |
Q |
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|||||| |||||||| ||||||||| |||| | | |||||||||||||||||||||||||||||||||||||| || |||||||||| ||| |||||||| |
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| T |
10367337 |
ctacacaaaggaatgcgttgaagtagagtctggactctttcttcttcctgatgacattcttgaattgtgtttggatcgtcttccattcgaaggtctcaag |
10367436 |
T |
|
| Q |
397 |
aatgttaggcttgcttgcaagaattggagttccttccttactaccgagagaatccttcaaataa |
460 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
10367437 |
aatgttaggcttgtttgcaagaattggagttccttccttaccactgagagaatccttcaaataa |
10367500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 4e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 40 - 285
Target Start/End: Original strand, 31329213 - 31329456
Alignment:
| Q |
40 |
tttcaaagagaaaatgaaactaacgaagggttccggaaagcctgcaaagcactctgggagtccctctccaccaaaagatgacgcagatggtgttgaatgg |
139 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| |||||| ||| ||||| | ||||| |
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| T |
31329213 |
tttcgaagagaaaatggaactaacgaagggttcccgaaagcctgcaaagcactccaggagtccc-ctccaccctaagatgccgccaatggtacttaatgg |
31329311 |
T |
|
| Q |
140 |
caaattccagaaccaacacaaagccaaataactcaga---ctcaaaaactgatttttgacccaaattgtaagaaaaacaacccaaaaaagatcctcgata |
236 |
Q |
| |
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|||||||||| |||||||||| |||||||||| ||| ||||||||| || ||||||||||| ||| |||||||||||||||||||| |||||||||| |
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| T |
31329312 |
aaaattccagagccaacacaaatccaaataact-agacctctcaaaaaccgaattttgacccaagttgcaagaaaaacaacccaaaaaa-atcctcgata |
31329409 |
T |
|
| Q |
237 |
atcacgaaaaatgccaccacaagcagccaagccatcaacaactgaacca |
285 |
Q |
| |
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||| ||||||| | |||||||||||| ||||||| |||||||||||| |
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| T |
31329410 |
ttcatgaaaaatactaccacaagcagctaagccat--acaactgaacca |
31329456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 40 - 285
Target Start/End: Original strand, 31335934 - 31336177
Alignment:
| Q |
40 |
tttcaaagagaaaatgaaactaacgaagggttccggaaagcctgcaaagcactctgggagtccctctccaccaaaagatgacgcagatggtgttgaatgg |
139 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| |||||| ||| ||||| | ||||| |
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| T |
31335934 |
tttcgaagagaaaatggaactaacgaagggttcccgaaagcctgcaaagcactccaggagtccc-ctccaccctaagatgccgccaatggtacttaatgg |
31336032 |
T |
|
| Q |
140 |
caaattccagaaccaacacaaagccaaataactcaga---ctcaaaaactgatttttgacccaaattgtaagaaaaacaacccaaaaaagatcctcgata |
236 |
Q |
| |
|
|||||||||| |||||||||| |||||||||| ||| ||||||||| || ||||||||||| ||| |||||||||||||||||||| |||||||||| |
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| T |
31336033 |
aaaattccagagccaacacaaatccaaataact-agacctctcaaaaaccgaattttgacccaagttgcaagaaaaacaacccaaaaaa-atcctcgata |
31336130 |
T |
|
| Q |
237 |
atcacgaaaaatgccaccacaagcagccaagccatcaacaactgaacca |
285 |
Q |
| |
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||| ||||||| | |||||||||||| ||||||| |||||||||||| |
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| T |
31336131 |
ttcatgaaaaatactaccacaagcagctaagccat--acaactgaacca |
31336177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 314 - 431
Target Start/End: Original strand, 43657570 - 43657687
Alignment:
| Q |
314 |
ttgaagtacagtccgaaatctttcttcttcctgatgacattcttgaattgtgtttgaattgtcttccatttgaaagtctcaagaatgttaggcttgcttg |
413 |
Q |
| |
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|||||||| |||||||||||||||||||||| |||| ||||||||| |||||||| || || || ||| ||||||||| | |||| |||||||| || |
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| T |
43657570 |
ttgaagtaaagtccgaaatctttcttcttcccgatggtattcttgaaatgtgtttggatcgtgttgcatgcgaaagtctcgataatgctaggcttgtgtg |
43657669 |
T |
|
| Q |
414 |
caagaattggagttcctt |
431 |
Q |
| |
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||| || ||||||||||| |
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| T |
43657670 |
caaaaaatggagttcctt |
43657687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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