View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20269_low_10 (Length: 345)
Name: NF20269_low_10
Description: NF20269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20269_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 4 - 226
Target Start/End: Original strand, 36281823 - 36282044
Alignment:
| Q |
4 |
tccaagaatataacgacacttttagaggcataactttataccaaattatgtgtgacagaatatcaaagttagaatgttcaactctagtaagattctgata |
103 |
Q |
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| T |
36281823 |
tccaagcaaataacgatacttttaaaggcataactttataccaaattatgtgtgacagaatatcaaagttggaatattcaactctagtaagaatctgata |
36281922 |
T |
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| Q |
104 |
agcaccatttaccaaataaccatcaatggagttttataaccaaactcgtttagttgtcacattgtcctgcnnnnnnnntgttatttaacaaagaaacaca |
203 |
Q |
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| T |
36281923 |
agcaccctttaccaaataaccatcaatgaagttttataaccaaactcgtttatctgtcacgttgtcctgc-aaaaaaatgatatttaacaaagaaccaca |
36282021 |
T |
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| Q |
204 |
ttgttccatttaatcctctccca |
226 |
Q |
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| T |
36282022 |
ttgtttcatttaatcctctccca |
36282044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 253 - 341
Target Start/End: Original strand, 36282071 - 36282164
Alignment:
| Q |
253 |
cctctccaccgccatcatgcctctccacccccaacctagcctcttcatcacagc-----taacactcctttcaacacagagctcaaatagtcat |
341 |
Q |
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| T |
36282071 |
cctctccaccgccatcatgcctctccacccccaacatagcctcttcatctcagctatagtaacactgctttcaacacaaagctcaaatagtcat |
36282164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 32661749 - 32661787
Alignment:
| Q |
182 |
tgttatttaacaaagaaacacattgttccatttaatcct |
220 |
Q |
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| T |
32661749 |
tgttatctaacaaagaaacacattgttccaattaatcct |
32661787 |
T |
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