View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20269_low_14 (Length: 279)
Name: NF20269_low_14
Description: NF20269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20269_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 5154546 - 5154296
Alignment:
| Q |
18 |
agatggattagcacaagaagtgcaaaaagccatgaattacataacggtagcaagcaagcgaaaacagaaggaaaaaaggcacaggagccacccataaaaa |
117 |
Q |
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| T |
5154546 |
agatggattagcacaagaagtgcaaaaagccatgaattacataacggtagcaagcaagcgaaaatagaaggaaaaaaggcacaggagccacccataaaaa |
5154447 |
T |
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| Q |
118 |
atgcaaccagcaaacaacagctgcaatgctgcagagcactaagagaaggctaaaacagaaaaaccaaactgtcatcctnnnnnnnccaccgaaacagcag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5154446 |
atgcaaccagcaaacaacagctgcaatgctgcagagcactaacagaaggctaaaacagaaaaaccaaactgtcatcctaaaaaaaccaccgaaacagcag |
5154347 |
T |
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| Q |
218 |
cctgtcatcttgtgtctctatggttattgtgctgatctttcatatgatatt |
268 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5154346 |
cctgtcatcttgtgtctctatggttattgtgctaatctttcatatgatatt |
5154296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 8531720 - 8531971
Alignment:
| Q |
18 |
agatggattagcacaagaagtgcaaaaagccatgaattacataacggtagcaagcaagcgaaaacagaaggaaaa-aaggcacaggagccacccataaaa |
116 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8531720 |
agatggcttagcacaagaagtgcaaaaagccatgaattacataacggtagcaagcaagcgaaaacagaaggaaaaaaaggcacaggagccacccataaaa |
8531819 |
T |
|
| Q |
117 |
aatgcaaccagcaaacaacagctgcaatgctgcagagcactaagagaaggctaaaacagaaaaaccaaactgtcatcctnnnnnnnccaccgaaacagca |
216 |
Q |
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| T |
8531820 |
aatgcaaccagcaaacaacaactgcaatgctgcagagcactaacagaaggctaaaacagaaaaaccaaactgtcatcctcaaaaaaccaccgaaacagca |
8531919 |
T |
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| Q |
217 |
gcctgtcatcttgtgtctctatggttattgtgctgatctttcatatgatatt |
268 |
Q |
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| T |
8531920 |
gcctgtcatcttgtgtctctatggttattgtgctgatctttcatatgatatt |
8531971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 28697477 - 28697436
Alignment:
| Q |
224 |
atcttgtgtctctatggttattgtgctgatctttcatatgat |
265 |
Q |
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| T |
28697477 |
atcttgtgtctctatgattattgtaatgatctttcatatgat |
28697436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 222 - 268
Target Start/End: Complemental strand, 26305565 - 26305519
Alignment:
| Q |
222 |
tcatcttgtgtctctatggttattgtgctgatctttcatatgatatt |
268 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26305565 |
tcatgttgtgtctctaaggttattgtgctgatctttcatatgatatt |
26305519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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