View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20269_low_21 (Length: 227)
Name: NF20269_low_21
Description: NF20269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20269_low_21 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 21097544 - 21097770
Alignment:
| Q |
1 |
ttggattcttttggtagtttccattcatcagataatttcactttttcaacttctgattatggaactgttatgcaaagaatgatgaaattggattctgatg |
100 |
Q |
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| T |
21097544 |
ttggattcttttggtagtttccattcatcagataatttcactttttcaacttctgattatggaactgttctgcaaagaatgatgaaattggattctgatg |
21097643 |
T |
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| Q |
101 |
gtgttgtgagagtgtatagcagaactaatgtgtcacagaattggtatgtttcatggcaagcctttacaggtacttgtttagttcatggaatttgtggagc |
200 |
Q |
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| T |
21097644 |
gtgttgtgagagtgtatagcagaacgaatgtgtcacagaattggtatgtttcatggcaagcctttacaggtacttgtttagttcatggaatttgtggagc |
21097743 |
T |
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| Q |
201 |
taatagtacatgtagttatagtcctaa |
227 |
Q |
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| T |
21097744 |
taatagtacatgtagttatagtcctaa |
21097770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 21107163 - 21107389
Alignment:
| Q |
1 |
ttggattcttttggtagtttccattcatcagataatttcactttttcaacttctgattatggaactgttatgcaaagaatgatgaaattggattctgatg |
100 |
Q |
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||||| |||||||||||||||| |||||| |||||||| | ||| ||| |||||||||||||| ||| | ||||||| |||||| |||||||||||| |
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| T |
21107163 |
ttggactcttttggtagtttcctttcatcggataatttgattttcataacatctgattatggaacagttctacaaagaagaatgaaaatggattctgatg |
21107262 |
T |
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| Q |
101 |
gtgttgtgagagtgtatagcagaactaatgtgtcacagaattggtatgtttcatggcaagcctttacaggtacttgtttagttcatggaatttgtggagc |
200 |
Q |
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| T |
21107263 |
gtaatttaagggtgtatagtagaattaatgtgtcacaaaattggtatgtttcatggcaagccatttatggtgcttgcatagctcatgggatttgtggaga |
21107362 |
T |
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| Q |
201 |
taatagtacatgtagttatagtcctaa |
227 |
Q |
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|||||| ||||||||||||| |||||| |
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| T |
21107363 |
taatagcacatgtagttataatcctaa |
21107389 |
T |
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