View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20269_low_23 (Length: 212)
Name: NF20269_low_23
Description: NF20269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20269_low_23 |
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| [»] scaffold0268 (1 HSPs) |
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Alignment Details
Target: scaffold0268 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 22719 - 22899
Alignment:
| Q |
19 |
actcccttctcattgaaacatatataagcgattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcgaaaaaggctgattg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22719 |
actcccttctcattgaaacatatataagcgattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcgaaaaaggctgattg |
22818 |
T |
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| Q |
119 |
ggctatgaaatggatcgattcaagcgattcttttgctgaaagaattgttgcatttgcttgtgtagaaggaattttcttctc |
199 |
Q |
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| T |
22819 |
ggcaatgaaatggattgattcaagcgattcttttgctgaaagaatcgttgcatttgcttgtgtagaaggaattttcttctc |
22899 |
T |
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Target: chr7 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 10197369 - 10197189
Alignment:
| Q |
19 |
actcccttctcattgaaacatatataagcgattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcgaaaaaggctgattg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10197369 |
actcccttctcattgaaacatatataagcgattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcgaaaaaggctgattg |
10197270 |
T |
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| Q |
119 |
ggctatgaaatggatcgattcaagcgattcttttgctgaaagaattgttgcatttgcttgtgtagaaggaattttcttctc |
199 |
Q |
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| T |
10197269 |
ggcaatgaaatggattgattcaagcgattcttttgctgaaagaatcgttgcatttgcttgtgtagaaggaattttcttctc |
10197189 |
T |
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Target: chr1 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 24 - 199
Target Start/End: Original strand, 19457235 - 19457410
Alignment:
| Q |
24 |
cttctcattgaaacatatataagcgattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcgaaaaaggctgattgggcta |
123 |
Q |
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| T |
19457235 |
cttctcctcgaaacgtatataagcgattccgctgaaaagaatcgcttatttcatgcaattgaaacaattccatgtatcgcgaagaaagctgattgggcga |
19457334 |
T |
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| Q |
124 |
tgaaatggatcgattcaagcgattcttttgctgaaagaattgttgcatttgcttgtgtagaaggaattttcttctc |
199 |
Q |
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| T |
19457335 |
tgaaatggatcgattcaagcgattcttttgcagaaagaatcgttgcgtttgcttgtgttgaaggaatctttttctc |
19457410 |
T |
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Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 24 - 199
Target Start/End: Complemental strand, 25025856 - 25025681
Alignment:
| Q |
24 |
cttctcattgaaacatatataagcgattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcgaaaaaggctgattgggcta |
123 |
Q |
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|||||| | ||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||| || || || |||||||||||| |
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| T |
25025856 |
cttctcctcgaaacgtatataagcgattctgctgaaaagaatcgattatttcacgcaattgacacaattccgtgtattgctaagaaagctgattgggctt |
25025757 |
T |
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| Q |
124 |
tgaaatggatcgattcaagcgattcttttgctgaaagaattgttgcatttgcttgtgtagaaggaattttcttctc |
199 |
Q |
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||||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| ||||||||||||||||| |
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| T |
25025756 |
tgaaatggatcgattcaagcgattcttttgcagaaagaatcgttgctttcgcttgtgttgaaggaattttcttctc |
25025681 |
T |
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