View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20269_low_3 (Length: 606)
Name: NF20269_low_3
Description: NF20269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20269_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 1 - 589
Target Start/End: Original strand, 34787845 - 34788433
Alignment:
| Q |
1 |
tttattaatcatgctcggaatgtttgggaacgcgcggttactcttttgccgcgggttgatcagttgtggtataagtatattcatatggaggagatgcttg |
100 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34787845 |
tttattaatcatgctcggaatgtttgggatcgcgcggttactcttttgccgcgggttgatcagttgtggtataagtatattcatatggaggagatgcttg |
34787944 |
T |
|
| Q |
101 |
gcaatgttgcgggggcgaggctggttttcgagagatggatgaagtggatgccggatcagcaaggatggttatcttatataaaatttgagcttagatataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34787945 |
gcaatgttgcgggggcgaggctggttttcgagagatggatgaagtggatgccggatcagcaaggatggttatcttatataaaatttgagcttagatataa |
34788044 |
T |
|
| Q |
201 |
tgagattgaacgtgcgagagggattttcgagagatttgttttgtgtcatcctagggttggtgcttggattcgttatgcaaagtttgagatgaagaatggc |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34788045 |
tgagattgaacgtgcgagagggattttcgagagatttgttttgtgtcatcctagggttggtgcttggattcgttatgcaaagtttgagatgaagaatggc |
34788144 |
T |
|
| Q |
301 |
gaggttcctaaggcgaggattgtttatgaaagagcggtggagctagcggatgatgaggaagcagagctgctttttgtggcgtttgcggagtttgaggaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34788145 |
gaggttcctaaggcgaggattgtttatgaaagagcggtggagctagcggatgatgaggaagcagagctgctttttgtggcgtttgcggagtttgaggaaa |
34788244 |
T |
|
| Q |
401 |
ggtgtaaggaggcagggcgtgcgaggtgtatttataaatttgcacttgatcatattccgaaggggagggctgaggttttgtatcggaagtttgtagcatt |
500 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34788245 |
ggtgtaaggaggtagggcgtgcgaggtgtatttataaatttgcacttgatcatattccgaaggggagggctgaggttttgtatcggaagtttgcagcatt |
34788344 |
T |
|
| Q |
501 |
tgagaaacagaatggtgatagggaagggattgaggatgctattgttgggaagagaaggtttcagtatgaagatgaagttatgaaaaatc |
589 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34788345 |
tgagaaacagtatggtgatagggaagggattgaggatgctattgttgggaagagaaggtttcagtatgaagatgaagttatgaaaaatc |
34788433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 589
Target Start/End: Complemental strand, 2293352 - 2292761
Alignment:
| Q |
1 |
tttattaatcatgctcggaatgtttgggaacgcgcggttactcttttgccgcgggttgatcagttgtggtataagtatattcatatggaggagatgcttg |
100 |
Q |
| |
|
|||||||| ||||| ||||||||||||| ||||| |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2293352 |
tttattaaccatgcgaggaatgtttgggatcgcgctgttactcttttgccacgagtggatcagttgtggtataagtatattcatatggaggagatgcttg |
2293253 |
T |
|
| Q |
101 |
gcaatgttgcgggggcgaggctggttttcgagagatggatgaagtggatgccggatcagcaaggatggttatcttatataaaatttgagcttagatataa |
200 |
Q |
| |
|
||||||||||||||||||| | |||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
2293252 |
gcaatgttgcgggggcgagacaggtttttgagagatggatgaaatggatgccggatcagcaaggatggctatcttatataaaatttgagctgagatataa |
2293153 |
T |
|
| Q |
201 |
tgagattgaacgtgcgagagggattttcgagagatttgttttgtgtcatcctagggttggtgcttggattcgttatgcaaagtttgagatgaagaatggc |
300 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
2293152 |
tgagattgaacgagctagagggattttcgagagatttgtattgtgtcatcctagggttggtgcttggatacgttatgcgaagtttgagatgaagaatggc |
2293053 |
T |
|
| Q |
301 |
gaggttcctaaggcgaggattgtttatgaaagagcggtgg---agctagcggatgatgaggaagcagagctgctttttgtggcgtttgcggagtttgagg |
397 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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|
| T |
2293052 |
gaggttcctaaggcgaggaatgtttatgaaagagcggtggagaagcttgcggatgatgaggaagctgagctgctttttgtggcttttgcggagtttgagg |
2292953 |
T |
|
| Q |
398 |
aaaggtgtaaggaggcagggcgtgcgaggtgtatttataaatttgcacttgatcatattccgaaggggagggctgaggttttgtatcggaagtttgtagc |
497 |
Q |
| |
|
|||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
2292952 |
aaaggtgtaaggaggctgagcgggcgaggtgtatttataaatttgcacttgatcatattccgaaggggagggctgaggatttgtatcggaagtttgtggc |
2292853 |
T |
|
| Q |
498 |
atttgagaaacagaatggtgatagggaagggattgaggatgctattgttgggaagagaaggtttcagtatgaagatgaagttatgaaaaatc |
589 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
2292852 |
atttgagaaacagtatggtgatagggaagggattgaggatgctattgttgggaagagaaggtttcagtatgaagatgaagtgaggaaaaatc |
2292761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 391 - 591
Target Start/End: Complemental strand, 2598110 - 2597910
Alignment:
| Q |
391 |
tttgaggaaaggtgtaaggaggcagggcgtgcgaggtgtatttataaatttgcacttgatcatattccgaaggggagggctgaggttttgtatcggaagt |
490 |
Q |
| |
|
|||| |||||||||||| ||||||| | |||||| |||||||||||||||| || ||||| |||||||||||||||||||||||| ||||||| |||| | |
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| T |
2598110 |
tttgtggaaaggtgtaatgaggcagagtgtgcgatgtgtatttataaatttccaattgattatattccgaaggggagggctgaggatttgtatgggaaat |
2598011 |
T |
|
| Q |
491 |
ttgtagcatttgagaaacagaatggtgatagggaagggattgaggatgctattgttgggaagagaaggtttcagtatgaagatgaagttatgaaaaatct |
590 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||| |
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|
| T |
2598010 |
ttgtggcatttgagaaacagtatggtgatagggaagggattgaggatgctattgttgggaagagaaggtttcaatatgaagatgaagtgaggaaaaatct |
2597911 |
T |
|
| Q |
591 |
g |
591 |
Q |
| |
|
| |
|
|
| T |
2597910 |
g |
2597910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 7 - 342
Target Start/End: Complemental strand, 33635999 - 33635664
Alignment:
| Q |
7 |
aatcatgctcggaatgtttgggaacgcgcggttactcttttgccgcgggttgatcagttgtggtataagtatattcatatggaggagatgcttggcaatg |
106 |
Q |
| |
|
|||||||| ||||||||| || ||||| |||| |||||| |||||||| |||| ||||||||| |||| || ||||||||| |||| |||||||||| |
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|
| T |
33635999 |
aatcatgcaaggaatgtttacgatcgcgctgttattcttttaccgcgggtccatcaattgtggtatgagtacatacatatggagaagattcttggcaatg |
33635900 |
T |
|
| Q |
107 |
ttgcgggggcgaggctggttttcgagagatggatgaagtggatgccggatcagcaaggatggttatcttatataaaatttgagcttagatataatgagat |
206 |
Q |
| |
|
| || || | || |||||||||||| |||||| | |||||||| |||||||| | |||| | ||||| ||||||| ||| || | || ||||| || |
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|
| T |
33635899 |
tcgccggagttagagaggttttcgagaggtggatggaatggatgcctgatcagcatgcatggctctcttacataaaatatgaactaaagtacaatgaaat |
33635800 |
T |
|
| Q |
207 |
tgaacgtgcgagagggattttcgagagatttgttttgtgtcatcctagggttggtgcttggattcgttatgcaaagtttgagatgaagaatggcgaggtt |
306 |
Q |
| |
|
||||| ||||| ||||||||| |||||| ||||||||||| |||||||||||| | |||||||| || ||||||||||||||||| || ||| |
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|
| T |
33635799 |
cgaacgacttagaggaattttcgagctttttgttacatgtcatcctagtgttggtgcttggttacgttatgcgaaatttgagatgaagaatggtgaagtt |
33635700 |
T |
|
| Q |
307 |
cctaaggcgaggattgtttatgaaagagcggtggag |
342 |
Q |
| |
|
|||| ||| || | ||||||||||||||| |||||| |
|
|
| T |
33635699 |
cctagggcaagaagtgtttatgaaagagctgtggag |
33635664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 524 - 565
Target Start/End: Original strand, 24602074 - 24602115
Alignment:
| Q |
524 |
aagggattgaggatgctattgttgggaagagaaggtttcagt |
565 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||| |
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|
| T |
24602074 |
aagggattaaagatgctattgttgggaagagaaggtttcagt |
24602115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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