View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20269_low_4 (Length: 550)

Name: NF20269_low_4
Description: NF20269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20269_low_4
NF20269_low_4
[»] chr2 (10 HSPs)
chr2 (19-540)||(6988615-6989152)
chr2 (445-518)||(15571608-15571681)
chr2 (445-518)||(18454420-18454493)
chr2 (441-512)||(12522845-12522916)
chr2 (445-518)||(18453236-18453309)
chr2 (456-518)||(18454234-18454296)
chr2 (445-518)||(14493175-14493248)
chr2 (443-518)||(12522985-12523060)
chr2 (458-509)||(18453577-18453628)
chr2 (445-518)||(18454068-18454141)
[»] chr6 (39 HSPs)
chr6 (441-512)||(639231-639302)
chr6 (441-512)||(639397-639468)
chr6 (443-519)||(640082-640158)
chr6 (445-518)||(29616515-29616588)
chr6 (441-512)||(29616140-29616211)
chr6 (441-512)||(34961918-34961989)
chr6 (445-518)||(30405516-30405589)
chr6 (445-512)||(2190888-2190955)
chr6 (448-518)||(638720-638790)
chr6 (441-507)||(2190543-2190609)
chr6 (441-518)||(30404787-30404864)
chr6 (442-518)||(30404974-30405051)
chr6 (443-512)||(30405143-30405212)
chr6 (447-518)||(1578088-1578159)
chr6 (443-518)||(7655505-7655580)
chr6 (445-512)||(12600783-12600850)
chr6 (445-496)||(29616683-29616734)
chr6 (455-518)||(34961406-34961469)
chr6 (441-498)||(639895-639951)
chr6 (455-512)||(1577608-1577665)
chr6 (445-518)||(30405702-30405775)
chr6 (460-512)||(30405345-30405397)
chr6 (445-512)||(24037058-24037125)
chr6 (453-512)||(34967725-34967784)
chr6 (441-479)||(2190737-2190775)
chr6 (457-518)||(7655690-7655751)
chr6 (457-518)||(7656043-7656104)
chr6 (445-518)||(30401582-30401655)
chr6 (441-518)||(34961732-34961809)
chr6 (445-509)||(2192094-2192158)
chr6 (459-518)||(639747-639806)
chr6 (464-518)||(1578271-1578325)
chr6 (455-497)||(12600959-12601001)
chr6 (441-487)||(29613736-29613782)
chr6 (443-512)||(7655343-7655412)
chr6 (445-482)||(29616330-29616367)
chr6 (445-518)||(34962108-34962181)
chr6 (448-512)||(1577924-1577988)
chr6 (445-509)||(24035784-24035848)
[»] chr1 (11 HSPs)
chr1 (441-518)||(48739442-48739519)
chr1 (441-518)||(48739610-48739687)
chr1 (441-518)||(24665752-24665829)
chr1 (445-517)||(24665918-24665990)
chr1 (443-518)||(41468036-41468111)
chr1 (443-518)||(41468456-41468531)
chr1 (443-518)||(41468276-41468351)
chr1 (441-497)||(48739796-48739852)
chr1 (464-518)||(24666103-24666157)
chr1 (456-497)||(48234533-48234574)
chr1 (474-518)||(48234385-48234429)
[»] chr7 (25 HSPs)
chr7 (455-518)||(8948160-8948223)
chr7 (441-518)||(44213590-44213667)
chr7 (441-507)||(13909982-13910048)
chr7 (445-512)||(13910327-13910394)
chr7 (445-512)||(13930377-13930444)
chr7 (441-518)||(13910137-13910214)
chr7 (455-518)||(35466998-35467061)
chr7 (440-501)||(8947463-8947524)
chr7 (455-512)||(8947829-8947886)
chr7 (447-518)||(15738216-15738287)
chr7 (456-518)||(8948327-8948389)
chr7 (441-487)||(13930539-13930585)
chr7 (445-518)||(13914408-13914480)
chr7 (455-512)||(15738710-15738767)
chr7 (445-518)||(35466822-35466895)
chr7 (455-512)||(35467164-35467221)
chr7 (455-500)||(35467330-35467375)
chr7 (456-518)||(8947295-8947357)
chr7 (445-509)||(13914931-13914995)
chr7 (445-512)||(13914579-13914646)
chr7 (463-518)||(13914776-13914831)
chr7 (448-518)||(8947119-8947189)
chr7 (464-518)||(15738050-15738104)
chr7 (441-518)||(35466652-35466729)
chr7 (448-512)||(15738387-15738451)
[»] chr8 (26 HSPs)
chr8 (448-518)||(23484138-23484208)
chr8 (445-518)||(23484693-23484766)
chr8 (445-507)||(23484321-23484383)
chr8 (441-507)||(23484503-23484569)
chr8 (445-518)||(124071-124144)
chr8 (445-518)||(124461-124534)
chr8 (441-507)||(16534682-16534748)
chr8 (445-518)||(34907567-34907639)
chr8 (445-512)||(124651-124718)
chr8 (441-512)||(32058767-32058838)
chr8 (445-518)||(23483783-23483856)
chr8 (441-518)||(23484875-23484952)
chr8 (463-518)||(23483967-23484022)
chr8 (445-512)||(32058933-32059000)
chr8 (445-512)||(34907222-34907289)
chr8 (441-518)||(23480053-23480130)
chr8 (445-518)||(34907401-34907474)
chr8 (445-512)||(16535027-16535094)
chr8 (445-512)||(32059524-32059591)
chr8 (441-518)||(124831-124908)
chr8 (440-509)||(32059361-32059430)
chr8 (441-472)||(9874270-9874301)
chr8 (443-518)||(32059093-32059168)
chr8 (441-507)||(9874436-9874502)
chr8 (441-479)||(16534876-16534914)
chr8 (445-509)||(16535872-16535936)
[»] chr4 (23 HSPs)
chr4 (445-518)||(13739966-13740039)
chr4 (445-518)||(13743239-13743312)
chr4 (443-518)||(15780571-15780646)
chr4 (445-512)||(43265197-43265264)
chr4 (441-518)||(43265359-43265436)
chr4 (445-518)||(43265712-43265785)
chr4 (445-509)||(43265043-43265107)
chr4 (445-512)||(13742876-13742943)
chr4 (445-509)||(15780782-15780846)
chr4 (445-500)||(13743425-13743480)
chr4 (445-512)||(15781317-15781383)
chr4 (463-512)||(43265564-43265613)
chr4 (445-518)||(43265878-43265951)
chr4 (455-518)||(47324588-47324651)
chr4 (445-512)||(47325078-47325145)
chr4 (455-518)||(47339384-47339447)
chr4 (445-512)||(47339874-47339941)
chr4 (456-518)||(47324091-47324153)
chr4 (456-518)||(47338887-47338949)
chr4 (441-518)||(15780944-15781021)
chr4 (463-512)||(15781169-15781218)
chr4 (445-518)||(47324412-47324485)
chr4 (445-518)||(47339208-47339281)
[»] scaffold0049 (7 HSPs)
scaffold0049 (445-518)||(5430-5503)
scaffold0049 (455-518)||(5254-5317)
scaffold0049 (441-518)||(5612-5689)
scaffold0049 (441-518)||(5763-5840)
scaffold0049 (458-518)||(5073-5133)
scaffold0049 (445-518)||(4874-4947)
scaffold0049 (450-518)||(5939-6007)
[»] chr3 (13 HSPs)
chr3 (445-518)||(49791194-49791267)
chr3 (441-518)||(49791835-49791912)
chr3 (455-511)||(11763327-11763383)
chr3 (463-518)||(11763501-11763556)
chr3 (455-508)||(11763825-11763878)
chr3 (440-512)||(51858248-51858319)
chr3 (451-518)||(11762971-11763038)
chr3 (455-518)||(11763141-11763204)
chr3 (445-512)||(49791028-49791095)
chr3 (448-518)||(51857885-51857955)
chr3 (456-518)||(51858080-51858142)
chr3 (455-512)||(49791651-49791708)
chr3 (455-498)||(11763659-11763702)
[»] chr5 (7 HSPs)
chr5 (441-512)||(11234921-11234992)
chr5 (445-512)||(11235255-11235322)
chr5 (445-512)||(22256610-22256677)
chr5 (464-518)||(11234747-11234801)
chr5 (447-518)||(11234581-11234652)
chr5 (450-496)||(11234437-11234483)
chr5 (441-479)||(22256459-22256497)
[»] scaffold0031 (3 HSPs)
scaffold0031 (445-512)||(82240-82307)
scaffold0031 (441-479)||(82089-82127)
scaffold0031 (445-509)||(83987-84051)
[»] scaffold0268 (3 HSPs)
scaffold0268 (441-507)||(4978-5044)
scaffold0268 (441-479)||(5172-5210)
scaffold0268 (445-512)||(5323-5390)


Alignment Details
Target: chr2 (Bit Score: 440; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 19 - 540
Target Start/End: Complemental strand, 6989152 - 6988615
Alignment:
Q  19 cacctagaagtcaagaatctgatacaccaagttcaagggcaagcacttctgattccgagggaggtacaagacaatggcgaggtttctttaaattaatcaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6989152 cacctagaagtcaagaatctgatacaccaagttcaagggcaagcacttctgattccgagggaggtacaagacaatggcgaggtttctttaaattaatcaa 6989053  T
Q  119 aaagggaccacaaatgccatttcatacctttcatccactgaaaaatgttccaaaacttactagacgaaagagcaaaagaattagggaggaattcattcca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6989052 aaagggaccacaaatgccatttcatacctttcatccactgaaaaatgttccaaaacttactagacgaaagagcaaaagaattagggaggaattcattcca 6988953  T
Q  219 tctctcaattctccagctcttcagtcttcttttgattctgagtttatgtgcttcaaatcttcattgaaaaatttccctctcgcagaaatccaagctgcaa 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  6988952 tctctcaattctccagctcttcagtcttcttttgattctgagtttatgtgcttcaaatcttcatggaaaaatttcactctcgcagaaatccaagctgcaa 6988853  T
Q  319 ccaatgactttagcctaggtatgtcacatcgacactttagattgaatatgtgttcattgcc---------------tcaggcaccgataaatttgattac 403  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||               |||||||||||||| ||||||||     
T  6988852 ccaatgactttagccaaggtatgtcacatcgacactttagattgaatatgtgctcattgcctgacacgtgttagtgtcaggcaccgataagtttgattat 6988753  T
Q  404 attcaatcacttatgtgttcgcctgtgccggtgccgtttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgta 503  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||    
T  6988752 attcaatcacttatgtgttcacctgtgccggtgccgtttcaaagatttcaaaacgactgatcaaactcacaactcttaccctaaatgaaataatcttgta 6988653  T
Q  504 gtcaaagtagttggacctgtg-cggtgccgtgtctgtg 540  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  6988652 gtcaaagtagttggacctgtgccggtgccgtgtctgtg 6988615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 445 - 518
Target Start/End: Complemental strand, 15571681 - 15571608
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||| |||||||||| |||||    
T  15571681 aagatttcaaaacgactaatcaaactcacaactcttaccctaactgaaagaatcttggagtcaaagtacttgga 15571608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 445 - 518
Target Start/End: Complemental strand, 18454493 - 18454420
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||| ||| ||||||| |||||||||| |||||||||||||| ||||||||||||| |||||||||| |||||    
T  18454493 aagatgtcataacgactcatcaaactcacaactcttaccctaactgaaagaatcttggagtcaaagtacttgga 18454420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 441 - 512
Target Start/End: Complemental strand, 12522916 - 12522845
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||| ||||||||| ||| ||| ||||||    
T  12522916 ttcaaagatgtcaaaacgactgatcaaattcacaactcttaccctaactgaaagaattttggagtgaaagta 12522845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 445 - 518
Target Start/End: Complemental strand, 18453309 - 18453236
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||| ||| ||||| | |||||||||| |||||||||||||||||||| ||||||| |||||||||| |||||    
T  18453309 aagatgtcataacgaatcatcaaactcacaactcttaccctaattgaaataatcttgcagtcaaagtacttgga 18453236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 456 - 518
Target Start/End: Complemental strand, 18454296 - 18454234
Alignment:
Q  456 acgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||| ||||| ||| |||||||||||||| ||||||||||||| ||| |||||| |||||    
T  18454296 acgactggtcaaaatcacaactcttaccctaactgaaagaatcttggagtgaaagtacttgga 18454234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 445 - 518
Target Start/End: Complemental strand, 14493248 - 14493175
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||| |||| | ||||||||||||||| |||||||||||||  ||||||||||||  ||| |||||| |||||    
T  14493248 aagatgtcaagatgactgatcaaactcaaaactcttaccctacgtgaaagaatcttagagtgaaagtacttgga 14493175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 518
Target Start/End: Complemental strand, 12523060 - 12522985
Alignment:
Q  443 caaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    |||||| |||| |||||||||||||||||| || ||||||||||| ||| ||||  ||| ||| |||||| |||||    
T  12523060 caaagacttcagaacgactgatcaaactcaaaattcttaccctaactgacagaactttggagtgaaagtacttgga 12522985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 509
Target Start/End: Complemental strand, 18453628 - 18453577
Alignment:
Q  458 gactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaa 509  Q
    |||| |||||||| | ||||||||||| |||||||||||||||| |||||||    
T  18453628 gactcatcaaacttacaactcttacccaaattgaaagaatcttgcagtcaaa 18453577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 518
Target Start/End: Complemental strand, 18454141 - 18454068
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||||| |||||||  | ||||| | ||||||||||| || |||||||||  ||||||||||||| |||||    
T  18454141 aagatttcagaacgactctttaaacttacaactcttacccaaactgaaagaataatgtagtcaaagtacttgga 18454068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 39)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 441 - 512
Target Start/End: Original strand, 639231 - 639302
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  639231 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaactgaaagaatcttgtagtcaaagta 639302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 441 - 512
Target Start/End: Original strand, 639397 - 639468
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    |||||||||||||||||||||| ||||||| | |||||||||||||| ||||||||||||||||||||||||    
T  639397 ttcaaagatttcaaaacgactgttcaaacttacaactcttaccctaactgaaagaatcttgtagtcaaagta 639468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 443 - 519
Target Start/End: Original strand, 640082 - 640158
Alignment:
Q  443 caaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttggac 519  Q
    ||||||||||||||||||| |||||||||| |||||||||| |||||| |||||||||| |||||||||| ||||||    
T  640082 caaagatttcaaaacgactcatcaaactcacaactcttaccttaattggaagaatcttgaagtcaaagtacttggac 640158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 518
Target Start/End: Original strand, 29616515 - 29616588
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    |||||||||||||||||||||||||||| |||||||||||||| | ||||||||||| ||||| |||| |||||    
T  29616515 aagatttcaaaacgactgatcaaactcacaactcttaccctaactaaaagaatcttggagtcagagtacttgga 29616588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 441 - 512
Target Start/End: Original strand, 29616140 - 29616211
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    |||||| |||||||||||||| |||||||||| |||||||||||||| | ||||||||||| ||||||||||    
T  29616140 ttcaaatatttcaaaacgacttatcaaactcacaactcttaccctaactaaaagaatcttggagtcaaagta 29616211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 441 - 512
Target Start/End: Original strand, 34961918 - 34961989
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    ||||||||| |||  ||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||    
T  34961918 ttcaaagatgtcagcacgactgatcaaactcacaactcttaccctaactgaaagaatcttggagtcaaagta 34961989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 445 - 518
Target Start/End: Original strand, 30405516 - 30405589
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||| ||| ||||||| |||||||||| |||||||||||||| ||||||||||||| |||||||||| |||||    
T  30405516 aagatgtcacaacgactaatcaaactcacaactcttaccctaactgaaagaatcttggagtcaaagtacttgga 30405589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 445 - 512
Target Start/End: Complemental strand, 2190955 - 2190888
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    |||||||||||||||||||||||||||  |||||||||||||| | ||||||| ||| ||||||||||    
T  2190955 aagatttcaaaacgactgatcaaactcgcaactcttaccctaacttaaagaatattggagtcaaagta 2190888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 448 - 518
Target Start/End: Original strand, 638720 - 638790
Alignment:
Q  448 atttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    |||| ||||||  |||||||||||| |||||||||||||  |||||||||| |||||||||||||||||||    
T  638720 attttaaaacgggtgatcaaactcacaactcttaccctatctgaaagaatcgtgtagtcaaagtagttgga 638790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 441 - 507
Target Start/End: Complemental strand, 2190609 - 2190543
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtca 507  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||| | ||||||| ||| |||||    
T  2190609 ttcaaagattttaaaacgactgatcaaactcacaactcttaccctaacttaaagaatattggagtca 2190543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 441 - 518
Target Start/End: Original strand, 30404787 - 30404864
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    |||||| |||||||||| ||| |||||||||| |||||||||||||| ||||||||||||| || || |||| |||||    
T  30404787 ttcaaatatttcaaaacaacttatcaaactcacaactcttaccctaactgaaagaatcttggaggcagagtacttgga 30404864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 442 - 518
Target Start/End: Original strand, 30404974 - 30405051
Alignment:
Q  442 tcaaagatttcaa-aacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    |||||||| |||| ||||||| |||| ||||| |||||||||||||| |||||||||| || ||||||||||||||||    
T  30404974 tcaaagatgtcaataacgacttatcagactcacaactcttaccctaactgaaagaatcatggagtcaaagtagttgga 30405051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 443 - 512
Target Start/End: Original strand, 30405143 - 30405212
Alignment:
Q  443 caaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    |||||| |||| ||||||| |||||||||| |||||||||||||| | ||||||||||| ||||||||||    
T  30405143 caaagacttcagaacgactaatcaaactcacaactcttaccctaactaaaagaatcttggagtcaaagta 30405212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 447 - 518
Target Start/End: Original strand, 1578088 - 1578159
Alignment:
Q  447 gatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||| |||||||  ||||| ||| ||||||||||| || |||||||||||||||||||||||| |||||    
T  1578088 gatttcataacgactcttcaaagtcacaactcttaccccaactgaaagaatcttgtagtcaaagtacttgga 1578159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 443 - 518
Target Start/End: Complemental strand, 7655580 - 7655505
Alignment:
Q  443 caaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    |||| ||||||  ||||||||||||||||| ||||||| |||||  ||||||||||||| |||||||||| |||||    
T  7655580 caaatatttcatcacgactgatcaaactcacaactcttgccctagctgaaagaatcttggagtcaaagtacttgga 7655505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 445 - 512
Target Start/End: Original strand, 12600783 - 12600850
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    ||||| ||| || ||||||||||||||| | |||||||| ||| ||||||||||||||||||||||||    
T  12600783 aagatgtcataatgactgatcaaactcacagctcttaccataactgaaagaatcttgtagtcaaagta 12600850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 445 - 496
Target Start/End: Original strand, 29616683 - 29616734
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaa 496  Q
    |||||||||||||||||||| ||||||| |||||||||||||| ||||||||    
T  29616683 aagatttcaaaacgactgatgaaactcacaactcttaccctaactgaaagaa 29616734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 455 - 518
Target Start/End: Original strand, 34961406 - 34961469
Alignment:
Q  455 aacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    |||||||||||||||||| |||||||||||||| | ||||||||||| | |||||||| |||||    
T  34961406 aacgactgatcaaactcacaactcttaccctaactaaaagaatcttggaatcaaagtacttgga 34961469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 441 - 498
Target Start/End: Original strand, 639895 - 639951
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatc 498  Q
    |||||||||||| ||||||||||||||||||| ||||||||||| || ||||||||||    
T  639895 ttcaaagatttcgaaacgactgatcaaactcaaaactcttaccc-aactgaaagaatc 639951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 455 - 512
Target Start/End: Original strand, 1577608 - 1577665
Alignment:
Q  455 aacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    |||||||||||| ||||| |||||||||||||| |||||||||||| |||| ||||||    
T  1577608 aacgactgatcagactcacaactcttaccctaactgaaagaatcttatagtgaaagta 1577665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 445 - 518
Target Start/End: Original strand, 30405702 - 30405775
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||| ||| ||||||| |||||||| | |||||||||||||| ||||||||||||| || ||||||| |||||    
T  30405702 aagatgtcacaacgactaatcaaactgacaactcttaccctaactgaaagaatcttggaggcaaagtacttgga 30405775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 460 - 512
Target Start/End: Original strand, 30405345 - 30405397
Alignment:
Q  460 ctgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    ||||||||||||| |||||||| ||||| ||||||||||||| ||||||||||    
T  30405345 ctgatcaaactcacaactcttagcctaactgaaagaatcttggagtcaaagta 30405397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 445 - 512
Target Start/End: Original strand, 24037058 - 24037125
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    |||||||||||||||||||| ||||||  ||||||||||| || | ||||||| ||| ||||||||||    
T  24037058 aagatttcaaaacgactgattaaactcgcaactcttaccccaacttaaagaatattggagtcaaagta 24037125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 453 - 512
Target Start/End: Original strand, 34967725 - 34967784
Alignment:
Q  453 aaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    |||||||||||||||||| | |||| ||| ||||| ||||||||||||| ||||||||||    
T  34967725 aaaacgactgatcaaacttacaactattaacctaactgaaagaatcttggagtcaaagta 34967784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 2190775 - 2190737
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactct 479  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  2190775 ttcaaagatttcaaaacgactgatcaaactcacaactct 2190737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 457 - 518
Target Start/End: Complemental strand, 7655751 - 7655690
Alignment:
Q  457 cgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    |||||||||||||||| ||||||| |||||  ||||||||||||| ||| |||||| |||||    
T  7655751 cgactgatcaaactcacaactcttgccctagctgaaagaatcttggagtgaaagtacttgga 7655690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 457 - 518
Target Start/End: Complemental strand, 7656104 - 7656043
Alignment:
Q  457 cgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    |||||||||||||||| ||||||| |||||  |||||||| |||| |||||||||| |||||    
T  7656104 cgactgatcaaactcacaactcttgccctagctgaaagaaccttggagtcaaagtacttgga 7656043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 445 - 518
Target Start/End: Original strand, 30401582 - 30401655
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||| ||| ||||||| |||||| ||| ||||||||||| || ||||||||| ||| |||||||||| |||||    
T  30401582 aagatgtcacaacgactaatcaaaatcacaactcttaccccaactgaaagaatgttggagtcaaagtatttgga 30401655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 441 - 518
Target Start/End: Original strand, 34961732 - 34961809
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    |||||| || ||| |||| ||||||||||| | |||| ||||||||| | ||||||||||| |||||||||| |||||    
T  34961732 ttcaaatatgtcataacggctgatcaaacttacaactattaccctaactaaaagaatcttggagtcaaagtacttgga 34961809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 445 - 509
Target Start/End: Complemental strand, 2192158 - 2192094
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaa 509  Q
    ||||||||||||||| | |||||||||| || |||| |||||| ||||||||| ||| |||||||    
T  2192158 aagatttcaaaacgaataatcaaactcaaaattcttgccctaactgaaagaatattggagtcaaa 2192094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 518
Target Start/End: Original strand, 639747 - 639806
Alignment:
Q  459 actgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    |||||||||||||| | ||| | |||||| ||||||||||||| |||||||||| |||||    
T  639747 actgatcaaactcacatctcattccctaactgaaagaatcttggagtcaaagtacttgga 639806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 518
Target Start/End: Original strand, 1578271 - 1578325
Alignment:
Q  464 tcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||||| |||||||| || || |||||||||| ||||||||||||| |||||    
T  1578271 tcaaactcacaactcttatcccaactgaaagaatcatgtagtcaaagtacttgga 1578325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 497
Target Start/End: Original strand, 12600959 - 12601001
Alignment:
Q  455 aacgactgatcaaactcataactcttaccctaattgaaagaat 497  Q
    |||||||||||||||||| ||||||||| |||| |||||||||    
T  12600959 aacgactgatcaaactcacaactcttactctaactgaaagaat 12601001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 487
Target Start/End: Original strand, 29613736 - 29613782
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaa 487  Q
    ||||||||| ||| ||||||| |||||||||| ||||||||||||||    
T  29613736 ttcaaagatgtcataacgactaatcaaactcacaactcttaccctaa 29613782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 512
Target Start/End: Complemental strand, 7655412 - 7655343
Alignment:
Q  443 caaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    |||| ||||||  ||||||||||||||||| ||||||| | |||  | ||||||||||| ||||||||||    
T  7655412 caaatatttcatcacgactgatcaaactcacaactcttgctctagcttaaagaatcttggagtcaaagta 7655343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 482
Target Start/End: Original strand, 29616330 - 29616367
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttac 482  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  29616330 aagatttcaaaacgactggtcaaactcacaactcttac 29616367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 518
Target Start/End: Original strand, 34962108 - 34962181
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||| | |||||| ||||||||| | ||||||||||||||  |||||||| | | |||||||||| |||||    
T  34962108 aagattttagaacgaccgatcaaacttacaactcttaccctaaccgaaagaatttgggagtcaaagtacttgga 34962181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 512
Target Start/End: Original strand, 1577924 - 1577988
Alignment:
Q  448 atttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    |||||| |||||||  ||||| ||| ||||||| |||| | ||||||||||||||||| ||||||    
T  1577924 atttcagaacgactcttcaaagtcacaactctttccctcactgaaagaatcttgtagtgaaagta 1577988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 445 - 509
Target Start/End: Original strand, 24035784 - 24035848
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaa 509  Q
    ||||||||||||||| | |||||||||| || ||||  ||||| ||||||||| ||| |||||||    
T  24035784 aagatttcaaaacgaataatcaaactcaaaattcttgacctaactgaaagaatattggagtcaaa 24035848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 441 - 518
Target Start/End: Original strand, 48739442 - 48739519
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||  |||||||||| |||||    
T  48739442 ttcaaagatttcaaaacgactgatcaaactcacaactcttaccctaactgaaagaatcttcgagtcaaagtacttgga 48739519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 441 - 518
Target Start/End: Original strand, 48739610 - 48739687
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||| |||||||||| |||||    
T  48739610 ttcaaagatttcaaaacgactgatcaaactcacaactcttaccctaactgaaagagtcttggagtcaaagtacttgga 48739687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 441 - 518
Target Start/End: Complemental strand, 24665829 - 24665752
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||||||||| ||||||| |||||||||| |||||||| ||||| |||||||||||||||||||||||| |||||    
T  24665829 ttcaaagatttcagaacgactcatcaaactcacaactcttagcctaactgaaagaatcttgtagtcaaagtacttgga 24665752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 445 - 517
Target Start/End: Complemental strand, 24665990 - 24665918
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgg 517  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||| ||||    
T  24665990 aagatttcagaacgactgatcaaactcataactcttaccgtaattgaaagaatctagtagtgaaagtacttgg 24665918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 443 - 518
Target Start/End: Original strand, 41468036 - 41468111
Alignment:
Q  443 caaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    |||||||||||  ||||||||| ||||||| ||||||| |||||| | ||||||||||| |||||||||| |||||    
T  41468036 caaagatttcatcacgactgatgaaactcacaactcttgccctaactaaaagaatcttggagtcaaagtacttgga 41468111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 443 - 518
Target Start/End: Original strand, 41468456 - 41468531
Alignment:
Q  443 caaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    |||||||||||  ||||||||||||||||| ||||||| |||||| | ||||||||||| ||| |||||| |||||    
T  41468456 caaagatttcatcacgactgatcaaactcacaactcttgccctaactaaaagaatcttggagttaaagtaattgga 41468531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 518
Target Start/End: Original strand, 41468276 - 41468351
Alignment:
Q  443 caaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    |||||||||||  ||||||||| | ||||| ||||||| |||||| | ||||||||||| |||||||||| |||||    
T  41468276 caaagatttcatcacgactgatgatactcacaactcttgccctaactaaaagaatcttggagtcaaagtacttgga 41468351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 497
Target Start/End: Original strand, 48739796 - 48739852
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaat 497  Q
    ||||||||| |||  |||||||||||||||||||| ||||||| ||| |||||||||    
T  48739796 ttcaaagatgtcagcacgactgatcaaactcataattcttaccataactgaaagaat 48739852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 518
Target Start/End: Complemental strand, 24666157 - 24666103
Alignment:
Q  464 tcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||||| ||||||||||| || ||||||||||||  |||||||||| |||||    
T  24666157 tcaaactcacaactcttaccccaactgaaagaatcttagagtcaaagtacttgga 24666103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 497
Target Start/End: Original strand, 48234533 - 48234574
Alignment:
Q  456 acgactgatcaaactcataactcttaccctaattgaaagaat 497  Q
    ||||||||||||||||| |||||||||| ||| |||||||||    
T  48234533 acgactgatcaaactcacaactcttaccataactgaaagaat 48234574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 518
Target Start/End: Original strand, 48234385 - 48234429
Alignment:
Q  474 aactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||||| |||| ||||||||||||| |||||||||| |||||    
T  48234385 aactcttactctaactgaaagaatcttggagtcaaagtacttgga 48234429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 6e-23; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 455 - 518
Target Start/End: Original strand, 8948160 - 8948223
Alignment:
Q  455 aacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  8948160 aacgactgatcaaactcacaactcttaccctaattgaaagaatcttgtagtcaaagtacttgga 8948223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 441 - 518
Target Start/End: Original strand, 44213590 - 44213667
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||  ||||||||| |||||    
T  44213590 ttcaaagatttcaaaacgactcatcaaactcataactcttaccctaactggaagaatcttgaggtcaaagtacttgga 44213667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 441 - 507
Target Start/End: Complemental strand, 13910048 - 13909982
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtca 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| |||||    
T  13910048 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaacttaaagaatattggagtca 13909982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 445 - 512
Target Start/End: Complemental strand, 13910394 - 13910327
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    |||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| ||||||||||    
T  13910394 aagatttcaaaacgactgatcaaactcacaactcttaccctaacttaaagaatattggagtcaaagta 13910327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 445 - 512
Target Start/End: Original strand, 13930377 - 13930444
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    ||||||||| ||||||| |||||||||| |||||||||||||| ||||||||||||| ||||||||||    
T  13930377 aagatttcataacgactaatcaaactcagaactcttaccctaactgaaagaatcttggagtcaaagta 13930444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 441 - 518
Target Start/End: Complemental strand, 13910214 - 13910137
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||||||||||||||||| |||||||||| |||||||||| ||| | ||||||||||| ||||| |||| |||||    
T  13910214 ttcaaagatttcaaaacgactaatcaaactcacaactcttaccttaacttaaagaatcttggagtcagagtaattgga 13910137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 455 - 518
Target Start/End: Original strand, 35466998 - 35467061
Alignment:
Q  455 aacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||| |||||||||  |||||||||||||| |||||||||||||||||||||||| |||||    
T  35466998 aacgactaatcaaactcgcaactcttaccctaactgaaagaatcttgtagtcaaagtacttgga 35467061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 440 - 501
Target Start/End: Original strand, 8947463 - 8947524
Alignment:
Q  440 tttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttg 501  Q
    |||| |||||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||    
T  8947463 tttccaagatttcaaaacgactgatcaaactcacaactcttatcctaactgaaaaaatcttg 8947524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 455 - 512
Target Start/End: Original strand, 8947829 - 8947886
Alignment:
Q  455 aacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    |||||||||||||||||| |||||||||| ||| |||||||||||| |||||||||||    
T  8947829 aacgactgatcaaactcacaactcttaccttaactgaaagaatcttatagtcaaagta 8947886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 447 - 518
Target Start/End: Complemental strand, 15738287 - 15738216
Alignment:
Q  447 gatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||| |||||||  ||||| ||| ||||||||||| || |||||||||||||||||||||||| |||||    
T  15738287 gatttcataacgactcttcaaagtcacaactcttaccccaactgaaagaatcttgtagtcaaagtacttgga 15738216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 456 - 518
Target Start/End: Original strand, 8948327 - 8948389
Alignment:
Q  456 acgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||||||||||||| |||||||||||||| ||||||||| ||||| | |||||| |||||    
T  8948327 acgactgatcaaactcacaactcttaccctaactgaaagaatattgtattgaaagtacttgga 8948389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 441 - 487
Target Start/End: Original strand, 13930539 - 13930585
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaa 487  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||    
T  13930539 ttcaaagatgtcaaaacgactgatcaaactcacaactcttaccctaa 13930585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 445 - 518
Target Start/End: Complemental strand, 13914480 - 13914408
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||| ||| |||||||||||||||||| |||||||||| ||| |||||| |||||||||| |||||| |||||    
T  13914480 aagatgtcataacgactgatcaaactcacaactcttaccataactgaaag-atcttgtagttaaagtacttgga 13914408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 455 - 512
Target Start/End: Complemental strand, 15738767 - 15738710
Alignment:
Q  455 aacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    |||||||||||| ||||| |||||||||||||| |||||||||||| |||| ||||||    
T  15738767 aacgactgatcagactcacaactcttaccctaactgaaagaatcttatagtgaaagta 15738710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 445 - 518
Target Start/End: Original strand, 35466822 - 35466895
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||| ||| ||||||| |||| ||||| |||||||||||||| |||||||||| || |||||||||| |||||    
T  35466822 aagatgtcagaacgactcatcagactcagaactcttaccctaactgaaagaatcctgcagtcaaagtacttgga 35466895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 455 - 512
Target Start/End: Original strand, 35467164 - 35467221
Alignment:
Q  455 aacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    |||||||||||||||||| |||||||| ||||| ||||||||||||| ||| ||||||    
T  35467164 aacgactgatcaaactcacaactcttatcctaactgaaagaatcttgcagtgaaagta 35467221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 455 - 500
Target Start/End: Original strand, 35467330 - 35467375
Alignment:
Q  455 aacgactgatcaaactcataactcttaccctaattgaaagaatctt 500  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||    
T  35467330 aacgactgatcaaactcacaactcttaccctaactgaaagaatctt 35467375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 456 - 518
Target Start/End: Original strand, 8947295 - 8947357
Alignment:
Q  456 acgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||||||||||||| |||||||||||||  |||| |||||||| ||| |||||| |||||    
T  8947295 acgactgatcaaactcacaactcttaccctatctgaacgaatcttggagtgaaagtacttgga 8947357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 445 - 509
Target Start/End: Complemental strand, 13914995 - 13914931
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaa 509  Q
    ||||||||||||||| | |||||||||| || |||| |||||| ||||||||| ||| |||||||    
T  13914995 aagatttcaaaacgaataatcaaactcaaaattcttgccctaactgaaagaatattggagtcaaa 13914931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 512
Target Start/End: Complemental strand, 13914646 - 13914579
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    ||||| ||| ||| ||| |||||||||| |||||||||| |||  |||||||||||| ||||||||||    
T  13914646 aagatgtcataacaacttatcaaactcacaactcttaccttaaccgaaagaatcttggagtcaaagta 13914579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 518
Target Start/End: Complemental strand, 13914831 - 13914776
Alignment:
Q  463 atcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    |||||||||| |||| ||||||||| ||||||||||||| ||| |||||| |||||    
T  13914831 atcaaactcacaacttttaccctaactgaaagaatcttgcagtaaaagtacttgga 13914776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 518
Target Start/End: Original strand, 8947119 - 8947189
Alignment:
Q  448 atttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    |||||| |||||||  |||||||||  ||||||| ||||| ||||||||||||| ||| |||||| |||||    
T  8947119 atttcagaacgactcttcaaactcacgactcttatcctaactgaaagaatcttggagtaaaagtacttgga 8947189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 518
Target Start/End: Complemental strand, 15738104 - 15738050
Alignment:
Q  464 tcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||||| |||||||| || || |||||||||| ||||||||||||| |||||    
T  15738104 tcaaactcacaactcttatcccaactgaaagaatcatgtagtcaaagtacttgga 15738050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 518
Target Start/End: Original strand, 35466652 - 35466729
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||||| ||| ||| ||| |||| ||||| |||||||||||||| ||||  || |||||||| |||||| |||||    
T  35466652 ttcaaagatgtcataactactcatcagactcacaactcttaccctaactgaacaaaccttgtagtgaaagtatttgga 35466729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 512
Target Start/End: Complemental strand, 15738451 - 15738387
Alignment:
Q  448 atttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    |||||| |||||||  ||||| ||| ||||||| |||| | ||||||||||||||||| ||||||    
T  15738451 atttcagaacgactcttcaaagtcacaactctttccctcactgaaagaatcttgtagtgaaagta 15738387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 448 - 518
Target Start/End: Original strand, 23484138 - 23484208
Alignment:
Q  448 atttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||| |||||    
T  23484138 atttcaaaacgactgatcaaactcacaactcttaccataattgaaagaatcttggagtcaaagtacttgga 23484208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 445 - 518
Target Start/End: Original strand, 23484693 - 23484766
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| || ||||||| |||||    
T  23484693 aagatttcaaaacgactgatcaaactcacaactcttaccctaactgaaagaatcttggagacaaagtacttgga 23484766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 445 - 507
Target Start/End: Original strand, 23484321 - 23484383
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtca 507  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||    
T  23484321 aagatttcaaaacgactgatcaaactcacaactcttaccctaactgaaagaatcttggagtca 23484383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 441 - 507
Target Start/End: Original strand, 23484503 - 23484569
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtca 507  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||| |||||    
T  23484503 ttcaaagatttcaaaacgactgatctaactcacaactcttaccctaactgaaagaatcttggagtca 23484569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 518
Target Start/End: Complemental strand, 124144 - 124071
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||| ||| |||||| |||||    
T  124144 aagatttcagaacgactgatcaaactcataactcttaccctgactgaaagaatcttgcagtgaaagtacttgga 124071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 518
Target Start/End: Complemental strand, 124534 - 124461
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||||| |||||||||| |||||    
T  124534 aagatttcaaaacaactgatcaaactcacaactcttaccctaactgaaataatcttggagtcaaagtacttgga 124461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 441 - 507
Target Start/End: Complemental strand, 16534748 - 16534682
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtca 507  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| |||||    
T  16534748 ttcaaagatttcaaaacgactgatcaaactcacaactcttaccctaacttaaagaatattggagtca 16534682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 445 - 518
Target Start/End: Original strand, 34907567 - 34907639
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||||||||||||| |||||||||| |||||||||||||| |||||| |||||| |||||||||| |||||    
T  34907567 aagatttcaaaacgactaatcaaactcacaactcttaccctaactgaaag-atcttggagtcaaagtacttgga 34907639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 445 - 512
Target Start/End: Complemental strand, 124718 - 124651
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    ||||||||| |||||||||||||||||| |||||||||||||| |||||||| | || ||||||||||    
T  124718 aagatttcagaacgactgatcaaactcacaactcttaccctaactgaaagaaccctggagtcaaagta 124651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 441 - 512
Target Start/End: Complemental strand, 32058838 - 32058767
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    ||||||||| |||||||||||||||||||||| |||||| |||| || ||||||||||||| ||| ||||||    
T  32058838 ttcaaagatgtcaaaacgactgatcaaactcacaactctaaccccaactgaaagaatcttggagtaaaagta 32058767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 445 - 518
Target Start/End: Original strand, 23483783 - 23483856
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||| | ||| ||| ||||||||||||||||||||||||| | ||||||||||||||| |||||| |||||    
T  23483783 aagattttagaacaactcatcaaactcataactcttaccctaactaaaagaatcttgtagttaaagtacttgga 23483856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 441 - 518
Target Start/End: Original strand, 23484875 - 23484952
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||||||||||| ||||| |||||||||| |||||||||||| | |  |||||||||| |||||||||| |||||    
T  23484875 ttcaaagatttcaaagcgactcatcaaactcacaactcttaccctcactagaagaatcttggagtcaaagtacttgga 23484952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 463 - 518
Target Start/End: Original strand, 23483967 - 23484022
Alignment:
Q  463 atcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    |||||||||| |||||||||||| ||| |||||||||||||||||||||| |||||    
T  23483967 atcaaactcacaactcttacccttattaaaagaatcttgtagtcaaagtacttgga 23484022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 445 - 512
Target Start/End: Complemental strand, 32059000 - 32058933
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    ||||||||| ||||||| | |||||||| |||||||||||||| ||||||||||||  ||||||||||    
T  32059000 aagatttcataacgactaaacaaactcagaactcttaccctaactgaaagaatctttgagtcaaagta 32058933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 445 - 512
Target Start/End: Original strand, 34907222 - 34907289
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    ||||||||| | ||| |||||||||||| |||||||| ||||| ||||||||||||| ||||||||||    
T  34907222 aagatttcacagcgattgatcaaactcacaactcttaacctaactgaaagaatcttggagtcaaagta 34907289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 441 - 518
Target Start/End: Original strand, 23480053 - 23480130
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||||||||||| ||||| |||||||||| |||| ||||||| | |  |||||||||| |||||||||| |||||    
T  23480053 ttcaaagatttcaaagcgactcatcaaactcacaacttttacccttactagaagaatcttggagtcaaagtacttgga 23480130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 445 - 518
Target Start/End: Original strand, 34907401 - 34907474
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||||||||| | |||||||||||| || |||| |||||  ||||||||||||| |||||||||| |||||    
T  34907401 aagatttcaaaacaattgatcaaactcaaaattcttgccctacctgaaagaatcttggagtcaaagtacttgga 34907474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 445 - 512
Target Start/End: Complemental strand, 16535094 - 16535027
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    ||||||||||||||||| |||||||||  |||||||||||||| | ||||||| ||  ||||||||||    
T  16535094 aagatttcaaaacgactaatcaaactcgcaactcttaccctaacttaaagaatattagagtcaaagta 16535027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 445 - 512
Target Start/End: Complemental strand, 32059591 - 32059524
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    |||||| || ||||||| |||||||||| || ||||||||||| ||||||||| ||| ||||||||||    
T  32059591 aagattgcagaacgactcatcaaactcacaaatcttaccctaactgaaagaatattggagtcaaagta 32059524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 441 - 518
Target Start/End: Complemental strand, 124908 - 124831
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||||| ||| ||| ||| |||||||||| ||||||| ||||||  |||||||||||| |||||| ||| |||||    
T  124908 ttcaaagatgtcataacaacttatcaaactcacaactcttgccctaacagaaagaatcttggagtcaatgtacttgga 124831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 440 - 509
Target Start/End: Complemental strand, 32059430 - 32059361
Alignment:
Q  440 tttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaa 509  Q
    |||||||||| | | |||| || |||||||||| |||||||||| ||| ||||||||||||| |||||||    
T  32059430 tttcaaagatgtaagaacgtcttatcaaactcacaactcttaccttaactgaaagaatcttggagtcaaa 32059361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 472
Target Start/End: Original strand, 9874270 - 9874301
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactca 472  Q
    ||||||||||||||||||||||||||||||||    
T  9874270 ttcaaagatttcaaaacgactgatcaaactca 9874301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 518
Target Start/End: Complemental strand, 32059168 - 32059093
Alignment:
Q  443 caaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    |||||| |||| |||||||||||||||||| || ||||||||||| ||| ||||  ||| ||| |||||| |||||    
T  32059168 caaagacttcagaacgactgatcaaactcaaaattcttaccctaactgacagaactttggagtgaaagtacttgga 32059093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 507
Target Start/End: Original strand, 9874436 - 9874502
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtca 507  Q
    |||||| ||||||||||||||  ||||||||| ||||||||||| || | ||||||| ||| |||||    
T  9874436 ttcaaatatttcaaaacgactcctcaaactcacaactcttacccgaacttaaagaatattggagtca 9874502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 16534914 - 16534876
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactct 479  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  16534914 ttcaaagatttaaaaacgactgatcaaactcacaactct 16534876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 445 - 509
Target Start/End: Complemental strand, 16535936 - 16535872
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaa 509  Q
    ||||||||||||||| | ||||| |||| || |||| |||||| ||||||||| ||| |||||||    
T  16535936 aagatttcaaaacgaataatcaagctcaaaattcttgccctaactgaaagaatattggagtcaaa 16535872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 9e-22; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 445 - 518
Target Start/End: Original strand, 13739966 - 13740039
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||| |||||||||| |||||    
T  13739966 aagatttcaaaacgactaatcaaactcacaactcttaccctaactgaaagaatcttggagtcaaagtacttgga 13740039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 518
Target Start/End: Original strand, 13743239 - 13743312
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    |||||||||||||||||||||||||||| || |||| |||||| ||||||||||||| |||||||||| |||||    
T  13743239 aagatttcaaaacgactgatcaaactcaaaattcttgccctaactgaaagaatcttggagtcaaagtacttgga 13743312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 443 - 518
Target Start/End: Original strand, 15780571 - 15780646
Alignment:
Q  443 caaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    |||||||||||||||||||  |||||| || |||||||||||||| ||||||||| ||| |||||||||| |||||    
T  15780571 caaagatttcaaaacgacttttcaaacgcacaactcttaccctaactgaaagaattttggagtcaaagtacttgga 15780646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 445 - 512
Target Start/End: Original strand, 43265197 - 43265264
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    ||||||||||||||||| |||||||||| || |||| |||||| ||||||||||||| ||||||||||    
T  43265197 aagatttcaaaacgactaatcaaactcaaaattcttgccctaactgaaagaatcttggagtcaaagta 43265264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 441 - 518
Target Start/End: Original strand, 43265359 - 43265436
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||||| ||| |||||||||||||||||| |||| |||| |||| ||||||||||||| ||| |||||| |||||    
T  43265359 ttcaaagatgtcagaacgactgatcaaactcacaacttttacgctaactgaaagaatcttgcagtgaaagtacttgga 43265436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 445 - 518
Target Start/End: Original strand, 43265712 - 43265785
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||| ||| ||||||||||||||| || | |||||||| ||| |||||||||||||||||||||||| |||||    
T  43265712 aagatgtcataacgactgatcaaacgcacagctcttaccataactgaaagaatcttgtagtcaaagtacttgga 43265785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 445 - 509
Target Start/End: Original strand, 43265043 - 43265107
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaa 509  Q
    ||||| ||| |||||||||||||||||| |||||||||||||| ||||||||||||  |||||||    
T  43265043 aagatatcagaacgactgatcaaactcacaactcttaccctaactgaaagaatcttagagtcaaa 43265107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 445 - 512
Target Start/End: Original strand, 13742876 - 13742943
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    ||||||||||| |||||||||||||||| |||||||| ||||| | |||||| |||| ||||||||||    
T  13742876 aagatttcaaagcgactgatcaaactcacaactcttaacctaactaaaagaaccttggagtcaaagta 13742943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 445 - 509
Target Start/End: Original strand, 15780782 - 15780846
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaa 509  Q
    ||||||||||||||||| |||||||||| || |||| |||||| ||||||||| ||| |||||||    
T  15780782 aagatttcaaaacgactaatcaaactcaaaattcttgccctaactgaaagaatattggagtcaaa 15780846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 445 - 500
Target Start/End: Original strand, 13743425 - 13743480
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatctt 500  Q
    |||||| || |||||||||||||||||| |||||||| ||||| ||||||||||||    
T  13743425 aagattccacaacgactgatcaaactcacaactcttaacctaactgaaagaatctt 13743480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 445 - 512
Target Start/End: Original strand, 15781317 - 15781383
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    ||||| ||| |||||||||| ||||||| |||||||||| ||| ||||||| ||||||||||||||||    
T  15781317 aagatgtcataacgactgattaaactcacaactcttaccataactgaaaga-tcttgtagtcaaagta 15781383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 463 - 512
Target Start/End: Original strand, 43265564 - 43265613
Alignment:
Q  463 atcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    |||||||||| |||||||||| |||  |||||||||||||||||||||||    
T  43265564 atcaaactcacaactcttaccttaaccgaaagaatcttgtagtcaaagta 43265613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 445 - 518
Target Start/End: Original strand, 43265878 - 43265951
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||| ||| |||||||||||||||||| ||| ||||| |||| ||||||||| ||||| | |||||| |||||    
T  43265878 aagatgtcataacgactgatcaaactcacaacgcttactctaactgaaagaatattgtattgaaagtacttgga 43265951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 518
Target Start/End: Original strand, 47324588 - 47324651
Alignment:
Q  455 aacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||| ||||||||||||||| ||||| ||| | ||||||||||| ||| |||||| |||||    
T  47324588 aacgactcatcaaactcataacttttaccttaactcaaagaatcttgcagtgaaagtacttgga 47324651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 512
Target Start/End: Original strand, 47325078 - 47325145
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    ||||| ||| ||||||| |||| ||||| |||||||||||||| | ||||||||||| ||| ||||||    
T  47325078 aagatgtcataacgactcatcagactcacaactcttaccctaactcaaagaatcttgcagtgaaagta 47325145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 518
Target Start/End: Original strand, 47339384 - 47339447
Alignment:
Q  455 aacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||| ||||||||||||||| ||||| ||| | ||||||||||| ||| |||||| |||||    
T  47339384 aacgactcatcaaactcataacttttaccttaactcaaagaatcttgcagtgaaagtacttgga 47339447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 512
Target Start/End: Original strand, 47339874 - 47339941
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    ||||| ||| ||||||| |||| ||||| |||||||||||||| | ||||||||||| ||| ||||||    
T  47339874 aagatgtcataacgactcatcagactcacaactcttaccctaactcaaagaatcttgcagtgaaagta 47339941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 518
Target Start/End: Original strand, 47324091 - 47324153
Alignment:
Q  456 acgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    |||||| |||| ||||| |||||||||||||| | ||||||||||| ||| |||||| |||||    
T  47324091 acgactcatcagactcacaactcttaccctaactcaaagaatcttgcagtgaaagtacttgga 47324153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 518
Target Start/End: Original strand, 47338887 - 47338949
Alignment:
Q  456 acgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    |||||| |||| ||||| |||||||||||||| | ||||||||||| ||| |||||| |||||    
T  47338887 acgactcatcagactcacaactcttaccctaactcaaagaatcttgcagtgaaagtacttgga 47338949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 518
Target Start/End: Original strand, 15780944 - 15781021
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||||| ||| ||  ||| |||||||||  |||| ||||||||| ||||||||||||| ||| |||||| |||||    
T  15780944 ttcaaagatgtcagaataactaatcaaactcgcaacttttaccctaactgaaagaatcttgcagtgaaagtacttgga 15781021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 512
Target Start/End: Original strand, 15781169 - 15781218
Alignment:
Q  463 atcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    |||||||||| |||||||||| |||  |||||||||||| ||||||||||    
T  15781169 atcaaactcacaactcttaccttaaccgaaagaatcttggagtcaaagta 15781218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 518
Target Start/End: Original strand, 47324412 - 47324485
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||||| || ||||  ||||||||| |||||||||||  | | |||||||| ||||||||||||| |||||    
T  47324412 aagatttcagaatgactcttcaaactcacaactcttacccagactaaaagaatcatgtagtcaaagtacttgga 47324485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 518
Target Start/End: Original strand, 47339208 - 47339281
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||||| || ||||  ||||||||| |||||||||||  | | |||||||| ||||||||||||| |||||    
T  47339208 aagatttcagaatgactcttcaaactcacaactcttacccagactaaaagaatcatgtagtcaaagtacttgga 47339281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 518
Target Start/End: Original strand, 5430 - 5503
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| || || |||| |||||    
T  5430 aagatttcaaaacgactgatcaaactcacaactcttaccctaactgaaagaatcttggagacagagtacttgga 5503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 455 - 518
Target Start/End: Original strand, 5254 - 5317
Alignment:
Q  455 aacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||| ||||| |||| |||||    
T  5254 aacgattgatcaaactcacaactcttaccctaattgaaagaatcttggagtcagagtatttgga 5317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 441 - 518
Target Start/End: Original strand, 5612 - 5689
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||||| ||| ||| ||| |||||||||| |||||| ||||||| |||||||||| || ||||||||||||||||    
T  5612 ttcaaagatgtcataacaacttatcaaactcacaactctcaccctaactgaaagaatcctggagtcaaagtagttgga 5689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 441 - 518
Target Start/End: Original strand, 5763 - 5840
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    |||||||||||||||| |||| ||||||| |  |||||||||||||| ||||||||||||  |||||||||| |||||    
T  5763 ttcaaagatttcaaaatgactaatcaaacacgcaactcttaccctaactgaaagaatcttagagtcaaagtatttgga 5840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 458 - 518
Target Start/End: Original strand, 5073 - 5133
Alignment:
Q  458 gactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||||||||||| |||||||||||||| ||||||||||||| ||||| |||| |||||    
T  5073 gactgatcaaactcacaactcttaccctaactgaaagaatcttggagtcagagtacttgga 5133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 445 - 518
Target Start/End: Original strand, 4874 - 4947
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||||||||||||||| |||||||  |||| |||||||||  ||||||||| || |||||||||| |||||    
T  4874 aagatttcaaaacgactgaacaaactccaaacttttaccctaaccgaaagaatcatggagtcaaagtacttgga 4947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 518
Target Start/End: Original strand, 5939 - 6007
Alignment:
Q  450 ttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    |||| |||||||||||||||||| |||||||||||||| | ||||| ||||| ||| |||||| |||||    
T  5939 ttcacaacgactgatcaaactcacaactcttaccctaactcaaagattcttgcagtgaaagtacttgga 6007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 445 - 518
Target Start/End: Original strand, 49791194 - 49791267
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||| ||| |||||||||||||||||| |||||||||  ||| |||||||||||||||||||||||| |||||    
T  49791194 aagatgtcataacgactgatcaaactcacaactcttactataactgaaagaatcttgtagtcaaagtacttgga 49791267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 441 - 518
Target Start/End: Original strand, 49791835 - 49791912
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||||| |||| ||||||||||||||||| |||||||||||||  ||||||||||||  ||| |||||| |||||    
T  49791835 ttcaaagatgtcaagacgactgatcaaactcaaaactcttaccctacgtgaaagaatcttagagtgaaagtacttgga 49791912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 455 - 511
Target Start/End: Original strand, 11763327 - 11763383
Alignment:
Q  455 aacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagt 511  Q
    |||||||||||||||||| |||||||||||||| |||||||| |||| |||||||||    
T  11763327 aacgactgatcaaactcacaactcttaccctaactgaaagaaacttgcagtcaaagt 11763383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 463 - 518
Target Start/End: Original strand, 11763501 - 11763556
Alignment:
Q  463 atcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    |||||||||| |||||||||||||| ||||||||||||| |||||||||| |||||    
T  11763501 atcaaactcacaactcttaccctaagtgaaagaatcttgcagtcaaagtacttgga 11763556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 455 - 508
Target Start/End: Original strand, 11763825 - 11763878
Alignment:
Q  455 aacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaa 508  Q
    |||||||||||||||||| |||||||||||||| | ||||||||||| ||||||    
T  11763825 aacgactgatcaaactcacaactcttaccctaactcaaagaatcttgcagtcaa 11763878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 440 - 512
Target Start/End: Original strand, 51858248 - 51858319
Alignment:
Q  440 tttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    |||| |||||||||||||||||||||||||||| |||||||| ||||| | ||| ||||||| ||| ||||||    
T  51858248 tttccaagatttcaaaacgactgatcaaactcacaactcttatcctaact-aaaaaatcttgaagtgaaagta 51858319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 451 - 518
Target Start/End: Original strand, 11762971 - 11763038
Alignment:
Q  451 tcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||||| || | ||||||| || |||||| |||| ||||||||||||| ||||||||||||||||    
T  11762971 tcaaaacgagtggtgaaactcaaaattcttactctaactgaaagaatcttggagtcaaagtagttgga 11763038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 455 - 518
Target Start/End: Original strand, 11763141 - 11763204
Alignment:
Q  455 aacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    |||||||||||||||| | || ||||||||||| ||||||||||||| ||| |||||| |||||    
T  11763141 aacgactgatcaaactaaaaattcttaccctaactgaaagaatcttgcagtgaaagtacttgga 11763204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 445 - 512
Target Start/End: Original strand, 49791028 - 49791095
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    ||||| ||| ||| |||||||||||||| |||||||||| |||  |||||||||||| ||||||||||    
T  49791028 aagatgtcataacaactgatcaaactcacaactcttaccttaaccgaaagaatcttgcagtcaaagta 49791095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 518
Target Start/End: Original strand, 51857885 - 51857955
Alignment:
Q  448 atttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    |||||| |||||||  |||||||||  ||||||||||||| ||||| ||||||| |||||||||| |||||    
T  51857885 atttcagaacgactcttcaaactcacgactcttaccctaactgaaataatcttggagtcaaagtacttgga 51857955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 456 - 518
Target Start/End: Original strand, 51858080 - 51858142
Alignment:
Q  456 acgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||||||||||||| |||||||||||||  |||| |||||||| ||| |||||| |||||    
T  51858080 acgactgatcaaactcacaactcttaccctagctgaacgaatcttggagtgaaagtacttgga 51858142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 455 - 512
Target Start/End: Original strand, 49791651 - 49791708
Alignment:
Q  455 aacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    |||||||||||||||||| |||||||||||||| | |||||||| |  ||||||||||    
T  49791651 aacgactgatcaaactcacaactcttaccctaactaaaagaatcctcgagtcaaagta 49791708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 498
Target Start/End: Original strand, 11763659 - 11763702
Alignment:
Q  455 aacgactgatcaaactcataactcttaccctaattgaaagaatc 498  Q
    |||||||||||||||||| |||||||||| ||| ||||||||||    
T  11763659 aacgactgatcaaactcacaactcttaccttaactgaaagaatc 11763702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 441 - 512
Target Start/End: Complemental strand, 11234992 - 11234921
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    ||||||||||||||||| |||||||||||||| ||||||| |||||  ||||| ||||||| ||||||||||    
T  11234992 ttcaaagatttcaaaactactgatcaaactcacaactctttccctagctgaaataatcttggagtcaaagta 11234921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 445 - 512
Target Start/End: Complemental strand, 11235322 - 11235255
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    ||||| ||| |||||| ||||||||||| ||| |||||||||| ||||||||||||| ||||||||||    
T  11235322 aagatgtcagaacgaccgatcaaactcacaacgcttaccctaactgaaagaatcttggagtcaaagta 11235255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 445 - 512
Target Start/End: Complemental strand, 22256677 - 22256610
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    ||||||||||||||||| |||||||||  |||||||||||||| | ||||||| ||| ||||||||||    
T  22256677 aagatttcaaaacgacttatcaaactcgcaactcttaccctaacttaaagaatattggagtcaaagta 22256610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 464 - 518
Target Start/End: Complemental strand, 11234801 - 11234747
Alignment:
Q  464 tcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||||| |||||||||||||| |||||||||| ||||||||||||| |||||    
T  11234801 tcaaactcacaactcttaccctaactgaaagaatcatgtagtcaaagtacttgga 11234747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 447 - 518
Target Start/End: Complemental strand, 11234652 - 11234581
Alignment:
Q  447 gatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagtagttgga 518  Q
    ||||||| |||||||  ||||| ||| ||||||||||| || |||||||||||| |||||||| || |||||    
T  11234652 gatttcagaacgactcttcaaagtcacaactcttaccccaactgaaagaatcttatagtcaaaatacttgga 11234581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 496
Target Start/End: Complemental strand, 11234483 - 11234437
Alignment:
Q  450 ttcaaaacgactgatcaaactcataactcttaccctaattgaaagaa 496  Q
    |||| ||||||| |||||||| | |||||||||||||||||||||||    
T  11234483 ttcagaacgacttatcaaactgacaactcttaccctaattgaaagaa 11234437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 22256497 - 22256459
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactct 479  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  22256497 ttcaaagacttcaaaacgactgatcaaactcacaactct 22256459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 445 - 512
Target Start/End: Complemental strand, 82307 - 82240
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    |||||||||||||||||||||||||||  |||||||||||||| | ||||||| ||| ||||| ||||    
T  82307 aagatttcaaaacgactgatcaaactcgcaactcttaccctaacttaaagaatattggagtcacagta 82240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 82127 - 82089
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactct 479  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  82127 ttcaaagacttcaaaacgactgatcaaactcacaactct 82089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 445 - 509
Target Start/End: Original strand, 83987 - 84051
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaa 509  Q
    ||||||||||||||| | |||||||||| || ||||  ||||| ||||||||| ||| |||||||    
T  83987 aagatttcaaaacgaataatcaaactcaaaattcttgacctaactgaaagaatattggagtcaaa 84051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 441 - 507
Target Start/End: Complemental strand, 5044 - 4978
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtca 507  Q
    |||||| ||||||||||||||||||||||||| ||||||||||| || | ||||||| ||| |||||    
T  5044 ttcaaatatttcaaaacgactgatcaaactcacaactcttacccgaacttaaagaatattggagtca 4978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 5210 - 5172
Alignment:
Q  441 ttcaaagatttcaaaacgactgatcaaactcataactct 479  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5210 ttcaaagatttcaaaacgactgatcaaactcataactct 5172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 512
Target Start/End: Complemental strand, 5390 - 5323
Alignment:
Q  445 aagatttcaaaacgactgatcaaactcataactcttaccctaattgaaagaatcttgtagtcaaagta 512  Q
    ||||||||||||| |||||||||||||  |||| ||||||| | | ||||||| ||| ||||||||||    
T  5390 aagatttcaaaacaactgatcaaactcgcaacttttaccctgacttaaagaatattggagtcaaagta 5323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University