View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20269_low_6 (Length: 401)
Name: NF20269_low_6
Description: NF20269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20269_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 383
Target Start/End: Original strand, 26579663 - 26580050
Alignment:
| Q |
13 |
tagttatatacctgtaaatgactcttgacatgagctagtgttagatctttcacatccattagctccaaaactgatttaggagtagctcctaccatccaaa |
112 |
Q |
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| T |
26579663 |
tagttatatacctgtaaatgactcttgacatgagctagtgttagatctttcacatccattagctccaaaactgatttaggagtagctcctaccatccaaa |
26579762 |
T |
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| Q |
113 |
attcaaaagaaaaatacatgagagttcaaaaatttactttatatagatatagatgtatagtatagtattc----------------acactcagatcgat |
196 |
Q |
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| T |
26579763 |
attcaaaagaaaaatacatgagagttcaaaaatttactttatatagatatagatgtatagtatagtattcacactcagatccaacgacactcagatcgat |
26579862 |
T |
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| Q |
197 |
aaagtgtatgtttagattgacaatga-aatgatagtatcagagtaaattatccaatttcttttaaaaacttttcttcaaagttttaactctgagattttg |
295 |
Q |
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| T |
26579863 |
aaagtgtaggtttagattgacagtgagattgatagaatcagagtaagttatccaatttcttttaaaaactttatttgagggttttatctctgagattttg |
26579962 |
T |
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| Q |
296 |
tcaaattcactgtcaatctaaacatacaaaccgacaatcctattatactggtgcagatgatctatactcatattaaaagggagagatt |
383 |
Q |
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| T |
26579963 |
tcaaattcactgtcaatctaaacatacaaaccgacaatcctattatactggtgccgatgatctatactcatattaaaagggagagatt |
26580050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 12344972 - 12344890
Alignment:
| Q |
21 |
tacctgtaaatgactcttgacatgagctagtgttagatctttcacatccattagctccaaaactgatttaggagtagctccta |
103 |
Q |
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| T |
12344972 |
tacctgtaagtgagacttgacatgtgctaatgtaagatccttcacatccattagttcaagaactgattttggagtagctccta |
12344890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 29259255 - 29259172
Alignment:
| Q |
20 |
atacctgtaaatgactcttgacatgagctagtgttagatctttcacatccattagctccaaaactgatttaggagtagctccta |
103 |
Q |
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| T |
29259255 |
atacctgcaaatggctttttacatgagctaatgtgagatccttcacatccatcagttccaaaactgactttggtgttgctccta |
29259172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 6455158 - 6455078
Alignment:
| Q |
22 |
acctgtaaatgactcttgacatgagctagtgttagatctttcacatccattagctccaaaactgatttaggagtagctcct |
102 |
Q |
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|||||||| ||||||||||| || ||||| |||||||| ||||||| ||||| ||| || || ||||| || || |||||| |
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| T |
6455158 |
acctgtaagtgactcttgacgtgtgctagggttagatccttcacattcattaactctaacacagattttggtgttgctcct |
6455078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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