View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20269_low_9 (Length: 345)
Name: NF20269_low_9
Description: NF20269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20269_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 24 - 329
Target Start/End: Original strand, 54716884 - 54717189
Alignment:
| Q |
24 |
atagatagatagatatactggacatatttaagtaaaaactgtattttgtaaatttcccaaaagtatattgaagaaatagaagggaatctcactttgactt |
123 |
Q |
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| T |
54716884 |
atagatagatagatatactggacatatttaagtaaaaactgtattttgtaaatttcccaaaagtatattgaagaaatagaagggaatctcactttgactt |
54716983 |
T |
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| Q |
124 |
ggacttgtaggaacttcacataatcgatgatctcatccagcatggaagccttgtctgtctgtcgatccacagaccaaacaaataattaaaatttcaacat |
223 |
Q |
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| T |
54716984 |
ggacttgtaggaacttcacataatcgatgatctcatccagcatggaagccttgtctgtctgtcgatccacagaccaaacaaataattaaaatttcaacat |
54717083 |
T |
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| Q |
224 |
ggatagatacacccattacactatgtttataagtgtcttatatttaaatgttttttaattggttaactaaccacatcttgagataattattgaggccata |
323 |
Q |
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| T |
54717084 |
ggatagatacacccattacactatgtttataagtgtcttatatttaaatgttttttaattggttaactaaccacatcttgagataattattgaggccata |
54717183 |
T |
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| Q |
324 |
aatttt |
329 |
Q |
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|||||| |
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| T |
54717184 |
aatttt |
54717189 |
T |
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