View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2026_high_1 (Length: 544)
Name: NF2026_high_1
Description: NF2026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2026_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 87 - 354
Target Start/End: Complemental strand, 17130137 - 17129870
Alignment:
| Q |
87 |
tttgctagtatttaatttattgcatactggttgtgcgactgatagtaatggaggagatgtaactggtctcgatcacttccattgtgcttgtcggagttcn |
186 |
Q |
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| T |
17130137 |
tttgctagtatttaatttattgcatactggttgtgcgactgatagtaatggaggagatgtaactggtctcgatcacttccattgtgcttgttggagttct |
17130038 |
T |
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| Q |
187 |
nnnnnnnnnnnnnnnnnnnnctgatattgatcgtgctcttgctctatatctctcgaccattgttgctttgaaatatgtcatcttagtcctctatcgtcta |
286 |
Q |
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| T |
17130037 |
tttttgtttgcctattttttccgatattgatcgtgcttttactctatatctctcgaccattgttgctttgaaatatgtcatcttagtgctctatcgtcta |
17129938 |
T |
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| Q |
287 |
atgaatatattggtttgaatatttgcatgaacattgttcttgtaacacactaattagttaagtagatt |
354 |
Q |
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| T |
17129937 |
atgaatatattggtttgaatatttgcatgaacattgttcttgtaacacactaattagttaagtagatt |
17129870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 101 - 450
Target Start/End: Complemental strand, 17165709 - 17165357
Alignment:
| Q |
101 |
atttattgcatactggtt--gtgcgactgatagtaatggaggagatgtaactggtctcgatcacttccattgtgcttgtcggagttcnnnnnnnnnnnnn |
198 |
Q |
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| T |
17165709 |
atttattgcatactggttttgtgtgactaatagtaatggagaagacttaaccagtctcgatcacttccattgtgcttgtcggagttctttcttgtttgcc |
17165610 |
T |
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| Q |
199 |
nnnnnnnnctgatattgatcgtgctcttgctctatatctctcgaccattgttgctttgaaatatgtcatcttagtcctctatcgtctaatgaatatattg |
298 |
Q |
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| T |
17165609 |
tattttttctgatattgatcatactttagctctatatctctcaatcattcttgccttgaaatatgtcatcttagtgctctatcgtctaatgaatatattg |
17165510 |
T |
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| Q |
299 |
gtttgaatatttgcatgaacattgttcttgtaacacactaattagttaagtagatttccttgataatgtcaatc-ttttatttgtaagtctcgtttccca |
397 |
Q |
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| T |
17165509 |
gtttgaatatttgcatgaacattgttcttgtaacacactaattagttaagtagatttccttgataatgtcaatctttttatttgtaagtctcatttccca |
17165410 |
T |
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| Q |
398 |
atcctgtaaccttttgtctcttttgatcttcaatataacatggtaagtgatta |
450 |
Q |
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| T |
17165409 |
atcatgtaaccgattgtcccattttatcttaaatataacacagtgagtgatta |
17165357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 313 - 449
Target Start/End: Complemental strand, 19971991 - 19971855
Alignment:
| Q |
313 |
atgaacattgttcttgtaacacactaattagttaagtagatttccttgataatgtcaatcttttatttgtaagtctcgtttcccaatcctgtaacctttt |
412 |
Q |
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| T |
19971991 |
atgaacattgttcttgtaacactctaattaggtgagtagatttccttcataatgttaatcttttatttgtaagtctcttctcccaatcctgcaacctttt |
19971892 |
T |
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| Q |
413 |
gtctcttttgatcttcaatataacatggtaagtgatt |
449 |
Q |
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| T |
19971891 |
gtctcatttgatcttcaatataacatggtgagtgatt |
19971855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 468 - 528
Target Start/End: Complemental strand, 17129821 - 17129761
Alignment:
| Q |
468 |
caatcaggaaaatataatgatcaaatcgattctggatttggttttggtgatgtggtagctg |
528 |
Q |
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| T |
17129821 |
caatcaggaaaatataatgatcaaatcgattctggatttggttttggtgatgtggtagctg |
17129761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 253 - 302
Target Start/End: Complemental strand, 19972447 - 19972398
Alignment:
| Q |
253 |
tttgaaatatgtcatcttagtcctctatcgtctaatgaatatattggttt |
302 |
Q |
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| T |
19972447 |
tttgaaatatgtcatcttagggctctatcgtctaatgaatatattggttt |
19972398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 19973495 - 19973443
Alignment:
| Q |
20 |
tttcaaaggcatgacctttgtttaattttgactctgtcatttagattttcaaa |
72 |
Q |
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| T |
19973495 |
tttcaaaggcatgagatctgtttcattttgactctgtcatttagattttcaaa |
19973443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 374
Target Start/End: Complemental strand, 4286553 - 4286489
Alignment:
| Q |
310 |
tgcatgaacattgttcttgtaacacactaattagttaagtagatttccttgataatgtcaatctt |
374 |
Q |
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| T |
4286553 |
tgcatgaacattgttcttgtgacacaccaagtaggcaagtagatttcttagataatatcagtctt |
4286489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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