View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2026_high_2 (Length: 388)
Name: NF2026_high_2
Description: NF2026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2026_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 120 - 378
Target Start/End: Complemental strand, 39394104 - 39393849
Alignment:
| Q |
120 |
ctacaatgttctctttattcaaaatttccactcatagtataattaggagaatatgattgcaaaaacaaccaatccaatcctttctccatttagttattca |
219 |
Q |
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| T |
39394104 |
ctacaatgttctctttattcaaaatttccactcatagtataattaggagaatatgattgcaaaaacaaccaatccaatcctttctccatttagttattca |
39394005 |
T |
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| Q |
220 |
aaatttcatgaacaactttctaaggcactaatcagatatttttcaattgcggtcttttgattggatgagatttgaacttgcaataacaaaatagattcaa |
319 |
Q |
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| T |
39394004 |
aaatttcatgaacaactttctaaggcactaatcagatatttttcaattgcggtcttttgattggatgagatttgaacttgcaataacaaaatagattcaa |
39393905 |
T |
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| Q |
320 |
tatttgctgaaagtagtaatgatataacaattgattttattcattcattaattcctttg |
378 |
Q |
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| T |
39393904 |
tatttgctgaa---agtaatgatataacaattgattttattcatccattaattcctttg |
39393849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 219 - 370
Target Start/End: Complemental strand, 13352013 - 13351865
Alignment:
| Q |
219 |
aaaatttcatgaacaactttctaaggcactaatcagatatttttcaattgcggtcttttgattggatgagatttgaacttgcaataacaaaatagattca |
318 |
Q |
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| T |
13352013 |
aaaatttcatgaacgactttctaaggcactaatcagatatttttcaattgcggtcttttgattggatgagatttgaacttgcaataacaaaatagattca |
13351914 |
T |
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| Q |
319 |
atatttgctgaaagtagtaatgatataacaattgattttattcattcattaa |
370 |
Q |
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| T |
13351913 |
atatttgctcaa---agtaatgatataacaattgattttattcatccattaa |
13351865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 13352150 - 13352063
Alignment:
| Q |
20 |
tcattgtcttgataagccagttaaccttagcagatatttagctttactatatctctgcaatgaaaattaaaccaatcagtctcattat |
107 |
Q |
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| T |
13352150 |
tcattgacttgataagccagttaaccttagcagatatttaactttactatatctctgcagtgaaaattaaaccagtcagtctcattat |
13352063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 39394160 - 39394097
Alignment:
| Q |
18 |
attcattgtcttgataagccagttaaccttagcagatatttagctttactatatctctgcaatg |
81 |
Q |
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| T |
39394160 |
attcattgtcttgataagccagttaaccttagcagatatttagctttactatatctctacaatg |
39394097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 331
Target Start/End: Complemental strand, 4058382 - 4058326
Alignment:
| Q |
275 |
tttgattggatgagatttgaacttgcaataacaaaatagattcaatatttgctgaaa |
331 |
Q |
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| T |
4058382 |
tttgattgcataagatttgaacttgcaaaaataaaatatattcaatacttgttgaaa |
4058326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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