View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2026_high_8 (Length: 236)
Name: NF2026_high_8
Description: NF2026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2026_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 41155525 - 41155607
Alignment:
| Q |
17 |
aggagtatgaaaaacattgacatttcaatgtagaaattttgttttggaaattgtgcaaatttatttttaataaatgtgttcag |
99 |
Q |
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| T |
41155525 |
aggagtatgaaaaacattgacatttcaatgtggaaattttgttttgaaaattgtgcaaatttatttttaataaatgtgttcag |
41155607 |
T |
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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 41155689 - 41155727
Alignment:
| Q |
181 |
gtctcgaccagagacattaatgaagtcgtcgaacctttg |
219 |
Q |
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| T |
41155689 |
gtctcgaccatagacattaatgaagtcgtcgaacctttg |
41155727 |
T |
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