View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2026_high_9 (Length: 233)

Name: NF2026_high_9
Description: NF2026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2026_high_9
NF2026_high_9
[»] chr6 (17 HSPs)
chr6 (20-217)||(5360665-5360862)
chr6 (28-214)||(5264410-5264584)
chr6 (67-216)||(5331937-5332086)
chr6 (113-214)||(5394185-5394286)
chr6 (124-214)||(5092790-5092880)
chr6 (121-214)||(5443953-5444046)
chr6 (124-212)||(5422055-5422143)
chr6 (124-214)||(5160660-5160750)
chr6 (124-214)||(5149864-5149954)
chr6 (160-214)||(5340442-5340496)
chr6 (124-214)||(5070579-5070669)
chr6 (124-194)||(5185038-5185108)
chr6 (124-215)||(5358295-5358386)
chr6 (121-214)||(5107942-5108035)
chr6 (121-214)||(5429448-5429541)
chr6 (28-66)||(5332411-5332449)
chr6 (156-214)||(5392999-5393057)
[»] scaffold0864 (2 HSPs)
scaffold0864 (87-213)||(4232-4358)
scaffold0864 (28-66)||(3993-4031)
[»] chr2 (2 HSPs)
chr2 (87-213)||(22589273-22589399)
chr2 (28-66)||(22589580-22589618)
[»] scaffold0294 (1 HSPs)
scaffold0294 (163-203)||(6621-6661)


Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 5360665 - 5360862
Alignment:
Q  20 atggtgaagaaaagcactccgagtcttcctcatccatgcctaatcttgatccagatccgaaatcatatccagaaccaatatcagaatctatagggataca 119  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  5360665 atggtgaagaaaagcactccgagtcttcttcatccatgcctaatcttgatcctgatccgaaatcatatccagaaccaatatcagaatctatagggattca 5360764  T
Q  120 cgacgtgttcttaagttttaggggagaggatacttgttcttccttcacttcacatctctatgctgcacttcaaaatgttggaattaaagtttttaaag 217  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5360765 cgacgtgttcttaagttttaggggagaggatactcgttcttccttcacttcacatctctacgctgcacttcaaaatgttggaattaaagtttttaaag 5360862  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 28 - 214
Target Start/End: Complemental strand, 5264584 - 5264410
Alignment:
Q  28 gaaaagcactccgagtcttcctcatccatgcctaatcttgatccagatccgaaatcatatccagaaccaatatcagaatctatagggatacacgacgtgt 127  Q
    ||||| || |||||||||||||||||||||||||||||||| ||||||||            |||| |||||||||||| | || |||| || |||||||    
T  5264584 gaaaaacaatccgagtcttcctcatccatgcctaatcttgaaccagatcc------------agaagcaatatcagaatttgtaaggattcatgacgtgt 5264497  T
Q  128 tcttaagttttaggggagaggatacttgttcttccttcacttcacatctctatgctgcacttcaaaatgttggaattaaagttttta 214  Q
    |||||||||| ||||||||||||||| |||||||||||  ||||||||| ||||| || |||||||||| |||||||||||||||||    
T  5264496 tcttaagtttcaggggagaggatactcgttcttccttcgtttcacatctatatgcagctcttcaaaatgctggaattaaagttttta 5264410  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 5332086 - 5331937
Alignment:
Q  67 gatccagatccgaaatcatatccagaaccaatatcagaatctatagggatacacgacgtgttcttaagttttaggggagaggatacttgttcttccttca 166  Q
    |||||||||||| || || ||||||||| |||||| |||| | || |||| |||||| | ||||||||||| ||||| |||||||||  ||||||||||     
T  5332086 gatccagatccggaaccagatccagaactaatatcggaatttgtaaggattcacgacatattcttaagtttcaggggggaggatactcattcttccttcg 5331987  T
Q  167 cttcacatctctatgctgcacttcaaaatgttggaattaaagtttttaaa 216  Q
     ||||||||| ||||| || |||||||||| |||||||||| ||||||||    
T  5331986 tttcacatctatatgcagctcttcaaaatgctggaattaaaatttttaaa 5331937  T

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Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 113 - 214
Target Start/End: Original strand, 5394185 - 5394286
Alignment:
Q  113 ggatacacgacgtgttcttaagttttaggggagaggatacttgttcttccttcacttcacatctctatgctgcacttcaaaatgttggaattaaagtttt 212  Q
    |||| |||||||||||||||||||| || || ||||| ||| ||||||| |||||||||||||||||||| || ||| ||||| |||||||||| |||||    
T  5394185 ggattcacgacgtgttcttaagtttcagaggggaggacactcgttcttcattcacttcacatctctatgcggctcttaaaaattttggaattaaggtttt 5394284  T
Q  213 ta 214  Q
    ||    
T  5394285 ta 5394286  T

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Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 124 - 214
Target Start/End: Original strand, 5092790 - 5092880
Alignment:
Q  124 gtgttcttaagttttaggggagaggatacttgttcttccttcacttcacatctctatgctgcacttcaaaatgttggaattaaagttttta 214  Q
    ||||||||||||||||| ||| | |||||| || | || ||||||||||||||||||||| |||||||||||| ||||||||| |||||||    
T  5092790 gtgttcttaagttttagaggaaaagatactcgtgcatcattcacttcacatctctatgcttcacttcaaaatgctggaattaatgttttta 5092880  T

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Target: chr6; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 121 - 214
Target Start/End: Original strand, 5443953 - 5444046
Alignment:
Q  121 gacgtgttcttaagttttaggggagaggatacttgttcttccttcacttcacatctctatgctgcacttcaaaatgttggaattaaagttttta 214  Q
    |||||||||||||||||||| ||  | |||||| || ||||||||||||||||||| |||||||| |||||||| | ||||||||| |||||||    
T  5443953 gacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggttttta 5444046  T

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Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 124 - 212
Target Start/End: Original strand, 5422055 - 5422143
Alignment:
Q  124 gtgttcttaagttttaggggagaggatacttgttcttccttcacttcacatctctatgctgcacttcaaaatgttggaattaaagtttt 212  Q
    ||||||||||||||||| |||||||||||| || | || ||||||||||||||||||||| | |||||||||   ||||||||||||||    
T  5422055 gtgttcttaagttttagaggagaggatactcgtgcatcattcacttcacatctctatgcttctcttcaaaattacggaattaaagtttt 5422143  T

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Target: chr6; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 5160750 - 5160660
Alignment:
Q  124 gtgttcttaagttttaggggagaggatacttgttcttccttcacttcacatctctatgctgcacttcaaaatgttggaattaaagttttta 214  Q
    ||||||||||||||||| ||| | |||||| || | || |||||||||||||||||||||||||||||||| | |||| |||| |||||||    
T  5160750 gtgttcttaagttttagaggaaaagatactcgtgcatcattcacttcacatctctatgctgcacttcaaaacgctggacttaacgttttta 5160660  T

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Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 5149954 - 5149864
Alignment:
Q  124 gtgttcttaagttttaggggagaggatacttgttcttccttcacttcacatctctatgctgcacttcaaaatgttggaattaaagttttta 214  Q
    ||||||||||||||||| || || |||||  |  | || ||||||||||||||||||||| | |||||||||| |||||||||||||||||    
T  5149954 gtgttcttaagttttagaggggaagatacgcgcgcatcattcacttcacatctctatgcttctcttcaaaatgctggaattaaagttttta 5149864  T

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Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 5340442 - 5340496
Alignment:
Q  160 tccttcacttcacatctctatgctgcacttcaaaatgttggaattaaagttttta 214  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||  |||||||    
T  5340442 tccttcacttcacatctctatgctgcacttcaaaatgctggaattactgttttta 5340496  T

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Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 5070669 - 5070579
Alignment:
Q  124 gtgttcttaagttttaggggagaggatacttgttcttccttcacttcacatctctatgctgcacttcaaaatgttggaattaaagttttta 214  Q
    |||||||||||||| || |||||||| ||| | ||||| ||||||||||||||||||||| | |||| |||   |||||| ||||||||||    
T  5070669 gtgttcttaagtttcagaggagaggacactcgctcttcattcacttcacatctctatgcttctcttcgaaactctggaatcaaagttttta 5070579  T

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Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 5185108 - 5185038
Alignment:
Q  124 gtgttcttaagttttaggggagaggatacttgttcttccttcacttcacatctctatgctgcacttcaaaa 194  Q
    ||||||||||||||||| || || |||||| |||||||||| ||||||||||||||| | || ||||||||    
T  5185108 gtgttcttaagttttagaggggaagatactcgttcttcctttacttcacatctctattccgctcttcaaaa 5185038  T

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Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 5358386 - 5358295
Alignment:
Q  124 gtgttcttaagttttaggggagaggatacttgttcttccttcacttcacatctctatgctgcacttcaaaatgttggaattaaagtttttaa 215  Q
    |||||||| ||||| || |||||||| |||  | ||| |||||||||||||||||||||| | ||||||||| | ||||| || ||||||||    
T  5358386 gtgttcttgagtttcagaggagaggacactcatgcttgcttcacttcacatctctatgcttcccttcaaaatctcggaatcaacgtttttaa 5358295  T

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Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 214
Target Start/End: Complemental strand, 5108035 - 5107942
Alignment:
Q  121 gacgtgttcttaagttttaggggagaggatacttgttcttccttcacttcacatctctatgctgcacttcaaaatgttggaattaaagttttta 214  Q
    ||||||||| ||||||| || ||  | |||||| || |||||||||||||||||||||||||| | ||||| || | |||||| || |||||||    
T  5108035 gacgtgttcctaagtttcagaggcaaagatactcgtgcttccttcacttcacatctctatgcttctcttcagaacgctggaatcaacgttttta 5107942  T

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Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 214
Target Start/End: Original strand, 5429448 - 5429541
Alignment:
Q  121 gacgtgttcttaagttttaggggagaggatacttgttcttccttcacttcacatctctatgctgcacttcaaaatgttggaattaaagttttta 214  Q
    ||||||||| |||||||||| || || |||||| |    || ||||||||||||||||||||| | |||||||||| ||||||||  |||||||    
T  5429448 gacgtgttcctaagttttagaggcgaagatactcgaggatcgttcacttcacatctctatgcttctcttcaaaatgctggaattactgttttta 5429541  T

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Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 5332449 - 5332411
Alignment:
Q  28 gaaaagcactccgagtcttcctcatccatgcctaatctt 66  Q
    |||||| |||||||||| |||||||||||||||||||||    
T  5332449 gaaaagaactccgagtcatcctcatccatgcctaatctt 5332411  T

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Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 5392999 - 5393057
Alignment:
Q  156 ttcttccttcacttcacatctctatgctgcacttcaaaatgttggaattaaagttttta 214  Q
    ||||||||||||||||||||||  |||||| ||||||||  || |||||| ||||||||    
T  5392999 ttcttccttcacttcacatctccttgctgctcttcaaaagtttcgaattacagttttta 5393057  T

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Target: scaffold0864 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0864
Description:

Target: scaffold0864; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 87 - 213
Target Start/End: Original strand, 4232 - 4358
Alignment:
Q  87 tccagaaccaatatcagaatctatagggatacacgacgtgttcttaagttttaggggagaggatacttgttcttccttcacttcacatctctatgctgca 186  Q
    ||||| |||||||||||||||| || |||| || || |||||||||||||| ||||||| ||||||| ||||| |||||  ||||||||| ||| | ||     
T  4232 tccaggaccaatatcagaatctgtaaggattcatgatgtgttcttaagtttcaggggagtggatactcgttctaccttcgtttcacatctatatacagct 4331  T
Q  187 cttcaaaatgttggaattaaagttttt 213  Q
    |||| ||||| || |||||||||||||    
T  4332 cttcgaaatgctgaaattaaagttttt 4358  T

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Target: scaffold0864; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 3993 - 4031
Alignment:
Q  28 gaaaagcactccgagtcttcctcatccatgcctaatctt 66  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  3993 gaaaagaactccgagtcttcctcatccatgcctaatctt 4031  T

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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 87 - 213
Target Start/End: Complemental strand, 22589399 - 22589273
Alignment:
Q  87 tccagaaccaatatcagaatctatagggatacacgacgtgttcttaagttttaggggagaggatacttgttcttccttcacttcacatctctatgctgca 186  Q
    ||||| |||||||||||||||| || |||| || || |||||||||||||| ||||||| ||||||| ||||| | |||  ||||||||| ||| | ||     
T  22589399 tccaggaccaatatcagaatctgtaaggattcatgatgtgttcttaagtttcaggggagtggatactcgttctacgttcgtttcacatctatatacagct 22589300  T
Q  187 cttcaaaatgttggaattaaagttttt 213  Q
    |||| ||||| || |||||||||||||    
T  22589299 cttcgaaatgctgtaattaaagttttt 22589273  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 22589618 - 22589580
Alignment:
Q  28 gaaaagcactccgagtcttcctcatccatgcctaatctt 66  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  22589618 gaaaagaactccgagtcttcctcatccatgcctaatctt 22589580  T

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Target: scaffold0294 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 6661 - 6621
Alignment:
Q  163 ttcacttcacatctctatgctgcacttcaaaatgttggaat 203  Q
    ||||||||||||||||||||| |||||||||| | ||||||    
T  6661 ttcacttcacatctctatgcttcacttcaaaacgctggaat 6621  T

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