View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2026_low_1 (Length: 615)

Name: NF2026_low_1
Description: NF2026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2026_low_1
NF2026_low_1
[»] chr6 (2 HSPs)
chr6 (19-608)||(1180844-1181429)
chr6 (29-232)||(1186228-1186434)
[»] chr4 (2 HSPs)
chr4 (117-210)||(10202876-10202969)
chr4 (122-283)||(49610963-49611124)
[»] chr8 (9 HSPs)
chr8 (117-290)||(5193807-5193980)
chr8 (122-350)||(5183508-5183736)
chr8 (117-223)||(5174917-5175023)
chr8 (117-288)||(6230501-6230672)
chr8 (117-288)||(5204066-5204237)
chr8 (194-292)||(1797160-1797258)
chr8 (390-450)||(5175190-5175250)
chr8 (390-453)||(5194080-5194143)
chr8 (390-453)||(6230774-6230837)
[»] chr7 (4 HSPs)
chr7 (117-223)||(8552671-8552777)
chr7 (114-223)||(5177410-5177519)
chr7 (117-223)||(8305866-8305972)
chr7 (390-453)||(5177695-5177758)


Alignment Details
Target: chr6 (Bit Score: 529; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 19 - 608
Target Start/End: Original strand, 1180844 - 1181429
Alignment:
Q  19 caataccaagaattacggtgcaccatctaagattgattttgataggtgtagaaatttaaaagagttatactcgtggtctgtggagagtacttcaacaaac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1180844 caataccaagaattacggtgcaccatctaagattgattttgataggtgtagaaatttaaaagagttatacttgtggtctgtggagagtacttcaacaaac 1180943  T
Q  119 aagtggtttcttgaattgtttccgaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgttcgac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1180944 aagtggtttcttgaattgtttccgaaattcccttttcttgagagtttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgttcgac 1181043  T
Q  219 ttaagagattggagtttatgcattcctctaacttgaaggagcttaatattgattctccaaatctaatatcatttggatatagcggtttgggtgcttcaga 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1181044 ttaagagattggagtttatgcattcctctaacttgaaggagcttaatattgattctccaaatctaatatcatttggatatagcggttggggtgcttcaga 1181143  T
Q  319 acctaccatatcttttttgaaaaattctagtccacaggcagcctgtattcatattgcggttgaatataaggatctttgcaacttgaggaaattcgtgcaa 418  Q
    |||||||||||||||||||||||||||||||| || || |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1181144 acctaccatatcttttttgaaaaattctagtcaactggaagcccgtattcatattgcggttgaatataaggatctttgcaacttgagggaattcgtgcaa 1181243  T
Q  419 aacattaaacctaacaatgttttgccatcactatctgtagccattggggagtcatatgtggtgagtatgaattaattaagtacttgattcattattggtt 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  1181244 aacattaaacctaacaatgttttgccatcactatctgtagccattgcggagtcatatgtggtgagtatg----aattaagtacttgattcattattggtt 1181339  T
Q  519 aattcaatttgtatgtttagttattaatttttgtgtatacttgccccgtcatatatatgtaggatgcattggacctagttgtttcatctc 608  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1181340 aattcgatttgtatgtttagttattaatttttgtgtatacttgccccgtcatatatatgtaggatgcattgggcctagttgtttcatctc 1181429  T

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Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 29 - 232
Target Start/End: Original strand, 1186228 - 1186434
Alignment:
Q  29 aattacggtgcaccatctaagattgattttgataggtgtagaaatttaaaagagttatactcgtggtctgtggagagtacttca---acaaacaagtggt 125  Q
    |||||||||| ||||||||  || ||| |||||||||| |||||||| ||||||||||  | | ||||||||| ||||||||     || ||||||||||    
T  1186228 aattacggtgtaccatctattatcgatattgataggtgcagaaattttaaagagttatttttgaggtctgtggcgagtacttttttcaccaacaagtggt 1186327  T
Q  126 ttcttgaattgtttccgaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgttcgacttaagag 225  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||| | |||||| |||| ||| ||| ||||||||||||||||||||||||||||||    
T  1186328 ttcttgaattgtttccgaaattcccctttcttgagagtttgaaattagaaaattgtgaaattcctgagaggattgatatttcaagtgttcgacttaagag 1186427  T
Q  226 attggag 232  Q
     ||||||    
T  1186428 gttggag 1186434  T

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Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 117 - 210
Target Start/End: Original strand, 10202876 - 10202969
Alignment:
Q  117 acaagtggtttcttgaattgtttccgaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaag 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |  |||||   |||| | |||||| | |||||||||||||||||    
T  10202876 acaagtggtttcttgaattgtttccgaaattcccttttcttgagagttttattttaaattcttgtgacatgcctgaaaagattgatatttcaag 10202969  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 122 - 283
Target Start/End: Original strand, 49610963 - 49611124
Alignment:
Q  122 tggtttcttgaattgtttccgaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgttcgactta 221  Q
    ||||||||||| ||||||  |||||||||||| |||||||| ||||||||   |||||| | |||| || ||| |||| ||||||||||||||| |||||    
T  49610963 tggtttcttgatttgtttttgaaattccctttccttgagatattgaaatttgccaattgcacaatgtctgagacgattaatatttcaagtgttcaactta 49611062  T
Q  222 agagattggagtttatgcattcctctaacttgaaggagcttaatattgattctccaaatcta 283  Q
    ||   ||||||||    |||| |  ||||||||||||| |||| |||||| |||||||||||    
T  49611063 aggtgttggagttatctcattgccttaacttgaaggaggttaacattgatgctccaaatcta 49611124  T

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Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 117 - 290
Target Start/End: Original strand, 5193807 - 5193980
Alignment:
Q  117 acaagtggtttcttgaattgtttccgaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgttcg 216  Q
    |||| |||||||| ||| ||||||| ||||| ||||| ||||||| ||||||||| ||||| |||| |||| |  ||| ||||||||||||||||| ||     
T  5193807 acaaatggtttctcgaactgtttccaaaatttcctttccttgagagtttgaaattgaacaactgtacaatggccgagaggattgatatttcaagtgatca 5193906  T
Q  217 acttaagagattggagtttatgcattcctctaacttgaaggagcttaatattgattctccaaatctaatatcat 290  Q
    |||||||   |||| |||     |||  ||||||||||||||| | || |||||| ||||||||||| ||||||    
T  5193907 acttaaggtgttggggttatctaattgttctaacttgaaggaggtcaacattgatgctccaaatctattatcat 5193980  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 122 - 350
Target Start/End: Original strand, 5183508 - 5183736
Alignment:
Q  122 tggtttcttgaattgtttccgaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgttcgactta 221  Q
    |||||||||||| ||||| |  |||  ||||| ||||||| ||| |||||  |  ||||||||||| || ||| |||| ||||||||||||||| |||||    
T  5183508 tggtttcttgaactgttttcagaatatcctttccttgagagtttaaaattgcattattgtaaaatggctgagacgattaatatttcaagtgttcaactta 5183607  T
Q  222 agagattggagtttatgcattcctctaacttgaaggagcttaatattgattctccaaatctaatatcatttggatatagcggtttgggtgcttcagaacc 321  Q
    ||   ||| ||||     |||  ||||||||||||||| ||||||||||| ||||||||||| |||||| || |||| ||| |   | || |||||| ||    
T  5183608 aggtgttgaagttatctaattgttctaacttgaaggaggttaatattgatgctccaaatctattatcatgtgtatattgcgatggtgttgattcagagcc 5183707  T
Q  322 taccatatcttttttgaaaaattctagtc 350  Q
    ||  ||||||||||||| || ||||||||    
T  5183708 tattatatcttttttgacaagttctagtc 5183736  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 117 - 223
Target Start/End: Original strand, 5174917 - 5175023
Alignment:
Q  117 acaagtggtttcttgaattgtttccgaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgttcg 216  Q
    |||| |||||||||||| ||||||| ||||| ||||| ||||||| |||||||||  ||||||| |  ||| |  |||||||| |||||||||||||||     
T  5174917 acaaatggtttcttgaactgtttcctaaatttcctttccttgagagtttgaaattggacaattgcactatgtccgagaagattaatatttcaagtgttca 5175016  T
Q  217 acttaag 223  Q
    |||||||    
T  5175017 acttaag 5175023  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 117 - 288
Target Start/End: Original strand, 6230501 - 6230672
Alignment:
Q  117 acaagtggtttcttgaattgtttccgaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgttcg 216  Q
    |||| |||||||||||| |||||   ||||| | ||| ||||||| |||||||||  |  |||||| |||| |  ||| |||| |||||||||||||||     
T  6230501 acaaatggtttcttgaactgtttagaaaatttcgtttccttgagagtttgaaattggatgattgtacaatggccgagaggattaatatttcaagtgttca 6230600  T
Q  217 acttaagagattggagtt-tatgcattcctctaacttgaaggagcttaatattgattctccaaatctaatatc 288  Q
    |||||||   |||||||| | || |||  ||||||||||||||| ||||||||||| ||||||||||| ||||    
T  6230601 acttaaggtgttggagttatctg-attgttctaacttgaaggaggttaatattgatgctccaaatctattatc 6230672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 117 - 288
Target Start/End: Original strand, 5204066 - 5204237
Alignment:
Q  117 acaagtggtttcttgaattgtttccgaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgttcg 216  Q
    |||| |||||||||||| ||||| | ||||| ||||| ||||||| |||||| || ||||||||||  |||    ||| |||| |||||||||||||||     
T  5204066 acaaatggtttcttgaactgttttcaaaatttcctttccttgagagtttgaagttgaacaattgtaggatgttcgagaggattaatatttcaagtgttca 5204165  T
Q  217 acttaagagattggagtttatgcattcctctaacttgaaggagcttaatattgattctccaaatctaatatc 288  Q
    |||||||   ||||||||     |||  ||||||||||||||| | || |||||  ||||||||||| ||||    
T  5204166 acttaaggtgttggagttatctaattgttctaacttgaaggaggtcaacattgacgctccaaatctattatc 5204237  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 292
Target Start/End: Complemental strand, 1797258 - 1797160
Alignment:
Q  194 aagattgatatttcaagtgttcgacttaagagattggagtttatgcattcctctaacttgaaggagcttaatattgattctccaaatctaatatcattt 292  Q
    |||||| ||||||||||||||| |||||||   ||||||||    ||||  ||||||||||||||| | || |||||| ||||||||||| ||||||||    
T  1797258 aagattaatatttcaagtgttcaacttaaggtgttggagttatctcattgttctaacttgaaggaggtcaacattgatgctccaaatctattatcattt 1797160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 390 - 450
Target Start/End: Original strand, 5175190 - 5175250
Alignment:
Q  390 atctttgcaacttgaggaaattcgtgcaaaacattaaacctaacaatgttttgccatcact 450  Q
    ||||||| ||||||||| |||| ||||||||||| |||||| | ||||||||| |||||||    
T  5175190 atctttgtaacttgagggaatttgtgcaaaacatcaaacctcaaaatgttttgacatcact 5175250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 453
Target Start/End: Original strand, 5194080 - 5194143
Alignment:
Q  390 atctttgcaacttgaggaaattcgtgcaaaacattaaacctaacaatgttttgccatcactatc 453  Q
    ||||||| ||||||||| |||| ||||||||||| |||||| | ||||||||| |||| |||||    
T  5194080 atctttgtaacttgagggaatttgtgcaaaacatcaaacctcaaaatgttttgtcatctctatc 5194143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 453
Target Start/End: Original strand, 6230774 - 6230837
Alignment:
Q  390 atctttgcaacttgaggaaattcgtgcaaaacattaaacctaacaatgttttgccatcactatc 453  Q
    ||||||| ||||||||| |||| ||||||||||| |||||| | ||||||||| |||| |||||    
T  6230774 atctttgtaacttgagggaatttgtgcaaaacatcaaacctcaaaatgttttgtcatctctatc 6230837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 117 - 223
Target Start/End: Complemental strand, 8552777 - 8552671
Alignment:
Q  117 acaagtggtttcttgaattgtttccgaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgttcg 216  Q
    |||| |||||||||||||||||| ||||||||||||| |||||||  ||||||||   ||| || | |||| || ||| |||| |||||||||||||||     
T  8552777 acaaatggtttcttgaattgttttcgaaattccctttccttgagagattgaaatttgtcaaatgcacaatgtctgagacgattaatatttcaagtgttca 8552678  T
Q  217 acttaag 223  Q
    |||||||    
T  8552677 acttaag 8552671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 5177410 - 5177519
Alignment:
Q  114 caaacaagtggtttcttgaattgtttccgaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgt 213  Q
    ||||||| |||||||||||| ||||||| ||||| ||||| ||||||| |||| ||||  ||| ||| |  ||| || |||||||| |||||||||||||    
T  5177410 caaacaaatggtttcttgaactgtttccaaaatttcctttccttgagagtttggaattggacagttgcactatgtctgagaagattaatatttcaagtgt 5177509  T
Q  214 tcgacttaag 223  Q
    || |||||||    
T  5177510 tcaacttaag 5177519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 223
Target Start/End: Original strand, 8305866 - 8305972
Alignment:
Q  117 acaagtggtttcttgaattgtttccgaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgttcg 216  Q
    |||| ||||||||||||||||||  ||||||| |||| |||||||  ||||||||   ||| || | |||| || ||| |||| |||||||||||||||     
T  8305866 acaaatggtttcttgaattgtttttgaaattcgctttccttgagagattgaaatttgtcaaatgcacaatgtctgagacgattaatatttcaagtgttca 8305965  T
Q  217 acttaag 223  Q
    |||||||    
T  8305966 acttaag 8305972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 453
Target Start/End: Original strand, 5177695 - 5177758
Alignment:
Q  390 atctttgcaacttgaggaaattcgtgcaaaacattaaacctaacaatgttttgccatcactatc 453  Q
    ||||||| ||||||||| |||| ||||||||||| |||||| | ||||||||| |||| |||||    
T  5177695 atctttgtaacttgagggaatttgtgcaaaacatcaaacctcaaaatgttttgtcatctctatc 5177758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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