View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2026_low_10 (Length: 302)
Name: NF2026_low_10
Description: NF2026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2026_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 290
Target Start/End: Complemental strand, 28331629 - 28331350
Alignment:
| Q |
11 |
catcatcacaactagccaaacaagtgttacaagaaaattcccaaatattctctaatagagtagtctcggatgcaatttgtgcacttgatcatcacaaatt |
110 |
Q |
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| T |
28331629 |
catcaccacaactagccaaacaagtgttacaagaaaattcccaaatattctctaatagagtagtctcggatgcaatttgtgcacttgatcatcacaaatt |
28331530 |
T |
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| Q |
111 |
ctcaatagggacacttccaacactagctttgtggaagaaactaaggaaaatttgtgctacacaagtattttctacaaaaatgcttgactcaacaaaaatc |
210 |
Q |
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| T |
28331529 |
ctcaataggaacacttccaacattagctttgtggaagaaactaaggaaaatttgtgctacacaagtattttctacaaaaatgcttgactcaacaaaaatc |
28331430 |
T |
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| Q |
211 |
cttcgccaacaaaagttgcaagaattattagattatgtgaatgaaaaaagcaacaaaggagaggtttttgatattggtga |
290 |
Q |
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| T |
28331429 |
cttcgtcaacaaaagttgcaagaattattagattatgtgaatgaaaaaagcaacaaaggagaggtttttgatattggtga |
28331350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 28310568 - 28310298
Alignment:
| Q |
19 |
caactagccaaacaagtgttacaagaaaattcccaaatattctctaatagagtagtctcggatgcaatttgtgcacttgatcatcacaaattctcaatag |
118 |
Q |
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| T |
28310568 |
caactagccaaacaagttttacatgaaaattctcaaatcttctctaatagaactgtcccacatgcactttgtgcacttgatcatgacaaattatcaattg |
28310469 |
T |
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| Q |
119 |
ggacacttccaacactagctttgtggaagaaactaaggaaaatttgtgctacacaagtattttctacaaaaatgcttgactcaacaaaaatccttcgcca |
218 |
Q |
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| T |
28310468 |
ggatgcttccaacattagcttcatggaagaaactaaggaaattttgtgctacaaaagtattttctacaaaagtacttgactcaacaaaaatccttcgcca |
28310369 |
T |
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| Q |
219 |
acaaaagttgcaagaattattagattatgtgaatgaaaaaagcaacaaaggagaggtttttgatattggtg |
289 |
Q |
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| T |
28310368 |
acaaaagttgcaagaattattagattatgtgaatgaaaaaagtaagaaaggtgagatttttgatattggtg |
28310298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 28297082 - 28296809
Alignment:
| Q |
17 |
cacaactagccaaacaagtgttacaagaaaattcccaaatattctctaatagagtagtctcggatgcaatttgtgcacttgatcatcacaaattctcaat |
116 |
Q |
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| T |
28297082 |
cacaagtagccaaacaagccttacatgaaaattcccaaatcttctctaatagaactgttccacatgcacttagtgcagttgatcatgacaaattctcaat |
28296983 |
T |
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| Q |
117 |
agggacacttccaacactagctttgtggaagaaactaaggaaaatttgtgctacacaagtattttctacaaaaatgcttgactcaacaaaaatccttcgc |
216 |
Q |
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| T |
28296982 |
tgggtggcttccaacattagctttatggaagaaactaaggaaaagttgtgccacaaatgtattttctaaaaaaatgcttgactcaacaaaaaaccttcgc |
28296883 |
T |
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| Q |
217 |
caacaaaagttgcaagaattattagattatgtgaatgaaaaaagcaacaaaggagaggtttttgatattggtga |
290 |
Q |
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| T |
28296882 |
caacaaaagttgcaagaattattggattatgtgaatgaaaaaagcaacaaaggtgaggtttttgatattggtga |
28296809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 28321144 - 28320871
Alignment:
| Q |
17 |
cacaactagccaaacaagtgttacaagaaaattcccaaatattctctaatagagtagtctcggatgcaatttgtgcacttgatcatcacaaattctcaat |
116 |
Q |
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||||| ||||||||||||| ||||| || ||||| ||||| || || |||||| ||| | ||||||| | |||| |||||||| ||||||||||| | |
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| T |
28321144 |
cacaagtagccaaacaagttttacatgacaattctcaaatcttttcaaatagaactgtcccacatgcaatctctgcagttgatcatgacaaattctcagt |
28321045 |
T |
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| Q |
117 |
agggacacttccaacactagctttgtggaagaaactaaggaaaatttgtgctacacaagtattttctacaaaaatgcttgactcaacaaaaatccttcgc |
216 |
Q |
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||| |||||||| || ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
28321044 |
tgggtgggttccaacattaaatttgtggaagaaactaaggaaaagttgtgctacaaaagtattttctacaaaaatgcttgactcaacaagaaaccttcgc |
28320945 |
T |
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| Q |
217 |
caacaaaagttgcaagaattattagattatgtgaatgaaaaaagcaacaaaggagaggtttttgatattggtga |
290 |
Q |
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| T |
28320944 |
caacaaaagttgcaagaattattagattatgtgaatgaaaaaagtaacaaaggtgaggtttttgatattggtga |
28320871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 290
Target Start/End: Original strand, 28288125 - 28288404
Alignment:
| Q |
11 |
catcatcacaactagccaaacaagtgttacaagaaaattcccaaatattctctaatagagtagtctcggatgcaatttgtgcacttgatcatcacaaatt |
110 |
Q |
| |
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||||| ||||| ||||||||||||| ||||| |||||||| ||||| ||||| |||||| ||| | ||||||| ||||||||||||| ||||||| |
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| T |
28288125 |
catcaccacaattagccaaacaagttttacatgaaaattctcaaatcttctcaaatagaactgtcccacatgcaatacatgcacttgatcataacaaatt |
28288224 |
T |
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| Q |
111 |
ctcaatagggacacttccaacactagctttgtggaagaaactaaggaaaatttgtgctacacaagtattttctacaaaaatgcttgactcaacaaaaatc |
210 |
Q |
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|||| | ||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
28288225 |
ctcacttgggtggcttccaacattagctttgtggaagaaactaaggaaaatttgtgctacaaaagtattttctacaaaaatgcttgactcaacaaaaaac |
28288324 |
T |
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| Q |
211 |
cttcgccaacaaaagttgcaagaattattagattatgtgaatgaaaaaagcaacaaaggagaggtttttgatattggtga |
290 |
Q |
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|||||||||||||||| |||| |||||| |||||||| || |||||| |||||||||| || | ||||||||||||||| |
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| T |
28288325 |
attcgccaacaaaagttacaagtattattggattatgtaaaggaaaaatgcaacaaaggtgaagcttttgatattggtga |
28288404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 28304765 - 28304692
Alignment:
| Q |
220 |
caaaagttgcaagaatta-ttagattatgtgaatgaaaaaagcaacaaaggagaggtttttgatattggtgatg |
292 |
Q |
| |
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|||||||| |||||||| || ||||||||||| |||||| || ||||||| || ||||||||||||||||||| |
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| T |
28304765 |
caaaagttaaaagaattaattggattatgtgaaagaaaaaggctacaaaggtgaagtttttgatattggtgatg |
28304692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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