View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2026_low_13 (Length: 236)
Name: NF2026_low_13
Description: NF2026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2026_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 22325469 - 22325251
Alignment:
| Q |
2 |
ctgtaagtacacatatttatattgtttcaactgatggagacataacataactta-ttacatactgagttgttatttactattttcgttttaaaattttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
22325469 |
ctgtaagtacacatatttatattgtttcaactgatggagacataacataacttagttacatactgagttgttatttactattttcgttt-aaaattttga |
22325371 |
T |
|
| Q |
101 |
atgaagaatggagaatctttccgcgctaaaggatttaagcgatataaattttcatccgatggtccattgattcgaggagataaagacacaacaatctata |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
22325370 |
atgaagaatggagaatctttccgcgctaatggatttaagcgatataaattatcatccgatgatccattgattcgaggagataaagacacaaaaatctata |
22325271 |
T |
|
| Q |
201 |
ttgatgcatctaaacaaact |
220 |
Q |
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|||||||||||||||||||| |
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| T |
22325270 |
ttgatgcatctaaacaaact |
22325251 |
T |
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