View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20270_high_10 (Length: 355)
Name: NF20270_high_10
Description: NF20270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20270_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 339
Target Start/End: Original strand, 2892880 - 2893208
Alignment:
| Q |
11 |
atgaaatttcatgagataaaacataagacacaactaagcttcaactaaatggccttctctttcccttttgatacttgcagttcatatgaaataaaatgta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2892880 |
atgaaatttcatgagataaaacataagacacaactaagcttcaagtaaatggccttctccttcccttttgatacttgcagttcatatgaaataaaacgta |
2892979 |
T |
|
| Q |
111 |
aaactattgggataaaattacatctcagtaaattccttactaaaacccaaaacagtctaattcctgactaactacattgtagtcttcactaacacaatta |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2892980 |
aaactattgggataaaattacatctcagtaaattccttactaaaacccaaatcagtctaattcctgactaactacattgtagtcttcactaacacaatta |
2893079 |
T |
|
| Q |
211 |
atcaatatgtattcaagtgatatatgaaaattgtaaatgtgtatcatagaatatataatcttgtcaattttaactacggataccctaagagcgaataatc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2893080 |
atcaatatgtattcaagtgatatatgaaaattgtaaatgtgtatcatagaatatataatcttgtcaattttaactccggataccctaagagcgaataatc |
2893179 |
T |
|
| Q |
311 |
acagggtccccgccaaccgggtggaatca |
339 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
2893180 |
acagggtccccgccaaccgggtggaatca |
2893208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 113 - 196
Target Start/End: Complemental strand, 3157761 - 3157678
Alignment:
| Q |
113 |
actattgggataaaattacatctcagtaaattccttactaaaacccaaaacagtctaattcctgactaactacattgtagtctt |
196 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3157761 |
actattcggataaaattacatctcagtaaatttcttactaaaacccaaaacagtctaattcatgactaactacattgtagtctt |
3157678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 3157008 - 3156943
Alignment:
| Q |
191 |
agtcttcactaacacaattaatcaatatgtattcaagtgat---atatgaaaattgtaaatgtgta |
253 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
3157008 |
agtcttcactaacacaatgaatcaatatgtattcaagtgatatgatatgaaaataataaatgtgta |
3156943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 3157326 - 3157261
Alignment:
| Q |
191 |
agtcttcactaacacaattaatcaatatgtattcaagtgat---atatgaaaattgtaaatgtgtat |
254 |
Q |
| |
|
|||||||||||| ||||| |||||| ||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
3157326 |
agtcttcactaatacaatgaatcaa-atgtattcaagtgatatgatatgaaaataataaatgtgtat |
3157261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University