View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20270_high_11 (Length: 354)
Name: NF20270_high_11
Description: NF20270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20270_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 12 - 338
Target Start/End: Original strand, 25153404 - 25153730
Alignment:
| Q |
12 |
agagaaggtgttgagagtgagaatggttcttctacgacggaatgtagcagtgttgtgacggtgatgaaaggtagggcggtgaggagcatgcgtttgagtg |
111 |
Q |
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| T |
25153404 |
agagaaggtgttgagagtgagaatggttcttctacgacggagtgtagcagtgttgtgacggtgatgaaaggtagggcggtgaggagcatgcgtttgagtg |
25153503 |
T |
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| Q |
112 |
agaatgtggtggatggtggtggtgatgaagttgttgtggcggttgaagagtggttggatgaatcgacaccgtattcgacgccgtgtgcgacgagtcctta |
211 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25153504 |
agaatgtggtggttggtggtggtgatgaagttgttgtggcggttgaagagtggttggatgaatcgacgccgtattcgacgccgtgtgcgacgagtcctta |
25153603 |
T |
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| Q |
212 |
ttatacaccacagtcttcccctacgcgtggaaatggttgaagtgaagtgaaactaacaccatcaagagtgtgttattgaatgaaattaggtaaataagat |
311 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25153604 |
ttatacaccacagtcttcacctacgcgtggaaatggttgaagtgaagtgaaactaacaccatcaagagtgtgttattgaatgaaattaggtaaataagat |
25153703 |
T |
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| Q |
312 |
gtattttatttttctcgtactaattta |
338 |
Q |
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||||||||||||||||||||||||||| |
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| T |
25153704 |
gtattttatttttctcgtactaattta |
25153730 |
T |
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