View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20270_high_16 (Length: 310)

Name: NF20270_high_16
Description: NF20270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20270_high_16
NF20270_high_16
[»] chr1 (4 HSPs)
chr1 (1-286)||(40290982-40291271)
chr1 (1-136)||(40283668-40283803)
chr1 (1-98)||(40264857-40264954)
chr1 (1-101)||(40256380-40256480)


Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 40291271 - 40290982
Alignment:
Q  1 atcaggcctctaaagatgatgatgggaccgttcgaattcaacgacctcttaaagggccattttatgtctctggcaaaacgattgatgaaaacattgcaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40291271 atcaggcctctaaagatgatgatgggaccgttcgaattcaacgacctcttaaagggccattttatgtctctggcaaaacgattgatgaaaacattgcaaa 40291172  T
Q  101 tttcgtggattatgcaaggttgctttactttatagttggttttgtg----taaggatgaaaacattttttattgactaaaatttcttattaggtattgta 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    |  |  |  ||  |||||||||||||||||||||||||||||||||||||    
T  40291171 tttcgtggattatgcaaggttgctttactttatagttggttttgtgtcttttggtctacaagaattttttattgactaaaatttcttattaggtattgta 40291072  T
Q  197 aggataattctgtggccctgacaatgattggtgcttgtttactagccgcatccactgttattatcttggaaggcggcgttgcactgaaat 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40291071 aggataattctgtggccctgacaatgattggtgcttgtttactagccgcatccactgttattatcttggaaggcggcgttgcactgaaat 40290982  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 40283803 - 40283668
Alignment:
Q  1 atcaggcctctaaagatgatgatgggaccgttcgaattcaacgacctcttaaagggccattttatgtctctggcaaaacgattgatgaaaacattgcaaa 100  Q
    |||||||||||||||||||||| |||||| |||||||||| |||||||  ||||||||||||||||||||| ||||| ||||||||||| ||  ||||||    
T  40283803 atcaggcctctaaagatgatgacgggaccattcgaattcagcgacctcccaaagggccattttatgtctctagcaaagcgattgatgaacacgctgcaaa 40283704  T
Q  101 tttcgtggattatgcaaggttgctttactttatagt 136  Q
     || ||| ||||||| ||||||||||||||||||||    
T  40283703 atttgtgaattatgctaggttgctttactttatagt 40283668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 40264954 - 40264857
Alignment:
Q  1 atcaggcctctaaagatgatgatgggaccgttcgaattcaacgacctcttaaagggccattttatgtctctggcaaaacgattgatgaaaacattgca 98  Q
    |||||||||||| ||||| ||| ||||| |||||||||||  ||||||  ||||| ||||||||||| ||  ||||||||||||||||| | ||||||    
T  40264954 atcaggcctctagagatggtgacgggactgttcgaattcagagacctcccaaaggaccattttatgtttcccgcaaaacgattgatgaacagattgca 40264857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 40256480 - 40256380
Alignment:
Q  1 atcaggcctctaaagatgatgatgggaccgttcgaattcaacgacctcttaaagggccattttatgtctctggcaaaacgattgatgaaaacattgcaaa 100  Q
    |||||||  ||||||| ||||  || ||| |||||||||| |||||    |||||||||||||||||||||  |||||| ||||| |||  |||||||||    
T  40256480 atcaggctgctaaagacgatgtcggaaccattcgaattcagcgaccctccaaagggccattttatgtctctcccaaaacaattgacgaactcattgcaaa 40256381  T
Q  101 t 101  Q
    |    
T  40256380 t 40256380  T

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