View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20270_high_19 (Length: 277)
Name: NF20270_high_19
Description: NF20270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20270_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 36810476 - 36810731
Alignment:
| Q |
1 |
ctttgctctctagcacttgaagctcttcctttgagggaacttatcctccaagattgcttcaattatacatatcatgggatctcttatctactgtcaaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36810476 |
ctttgctctctagcacttgaagctcttcctttgagggaacttatcctccaagattgcttcaattatacatatcatgggatctcttatctactgtcaaagt |
36810575 |
T |
|
| Q |
101 |
gtcgatttctacagcttctagatcttcaagatgcaaagtttttgaatgatcagcgtatcaatgagttgtctgtatatcttgctgatttggtgtctataaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36810576 |
gtcgatttctacagcttctagatcttcaagatgcaaagtttttgaatgatcagcgtatcaatgagttgtctgtatatcttgctgatttggtgtctataaa |
36810675 |
T |
|
| Q |
201 |
cgtcagcggttgttaccagctcacctattcagccttctttgcactccttaggaact |
256 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36810676 |
cgtcagcggttgttaccagctcacctattcatccttctttgcactccttaggaact |
36810731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 27005226 - 27005491
Alignment:
| Q |
1 |
ctttgctctctagcacttgaagctcttcctttgagggaacttatcctccaagattgcttcaattatacatatcatgggatctcttatctactgtcaaagt |
100 |
Q |
| |
|
||||||||| ||||||||||| |||||||| | | |||| | ||||| | ||| || ||||||||||| |||| |||| ||||||||| |||| || |
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| T |
27005226 |
ctttgctctttagcacttgaatctcttcctctaaacaaactcgttctccatggttgtttggattatacatattatggtatctattatctactatcaaggt |
27005325 |
T |
|
| Q |
101 |
gtcgatttctacagcttctagatcttcaagatgcaaagtttttgaatgatcagcgtatcaatgagttgtctgtatatcttgctgatttggtgtctataaa |
200 |
Q |
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||| |||||||||| ||||||||||||| ||||| ||||||||||||||| |||||| ||| |||||||| |||||||||||||||||||||||||| |
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| T |
27005326 |
ctcgttttctacagcatctagatcttcaatttgcaacttttttgaatgatcagggtatcactgacttgtctgtttatcttgctgatttggtgtctataaa |
27005425 |
T |
|
| Q |
201 |
cgtcagcggttgttaccagctcacctattcagccttctttgcactccttaggaactgtcctatgct |
266 |
Q |
| |
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| ||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||| |||| |
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| T |
27005426 |
cctcagcggttgtcaccagctcaccaactcagccttctttgcactccttaggaactgtcctttgct |
27005491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 36876210 - 36875950
Alignment:
| Q |
1 |
ctttgctctctagcacttgaagctcttcctttgagggaacttatcctccaagattgcttcaattatacatatcatgggatctcttatctactgtcaaagt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||| | ||||| | ||||||| ||||||||||| || |||||| | ||| ||||||||| |
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| T |
36876210 |
ctttgctctctagcacttgacgctcttcctttgaccaaacttgttctccatggttgcttccattatacatattataggatctatcgtctgttgtcaaagt |
36876111 |
T |
|
| Q |
101 |
gtcgatttctacagcttctagatcttcaagatgcaaagtttttgaatgatcagcgtatcaatgagttgtctgtatatcttgctgatttggtgtctataaa |
200 |
Q |
| |
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| ||||||||| | |||||||||||||| ||||| ||||||||||||||| |||||||||||||||| || || ||||| ||||||||||||||||| |
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| T |
36876110 |
cttcatttctacaacatctagatcttcaagctgcaatgtttttgaatgatcatcgtatcaatgagttgtgtgcatttcttggcgatttggtgtctataaa |
36876011 |
T |
|
| Q |
201 |
cgtcagcggttgttaccagctcacctattcagccttctttgcactccttaggaactgtcct |
261 |
Q |
| |
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||||| |||||| || |||||||| || |||||||||||||||| |||||||| |||||| |
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| T |
36876010 |
cgtcaatggttgtgacaagctcaccaatgcagccttctttgcacttcttaggaattgtcct |
36875950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 33708477 - 33708742
Alignment:
| Q |
1 |
ctttgctctctagcacttgaagctcttcctttgagggaacttatcctccaagattgcttcaattatacatatcatgggatctcttatctactgtcaaagt |
100 |
Q |
| |
|
|||| ||||||| |||||| |||||||||||||||| ||||| ||||||||| | ||| | | ||||| ||| || ||||||| | | ||||||||| |
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| T |
33708477 |
ctttactctctaacacttgcagctcttcctttgaggaaacttgtcctccaaggtcgctgccaatatacttataccggtatctcttgtttcttgtcaaagt |
33708576 |
T |
|
| Q |
101 |
gtcgatttctacagcttctagatcttcaagatgcaaagtttttgaatgatcagcgtatcaatgagttgtctgtatatcttgctgatttggtgtctataaa |
200 |
Q |
| |
|
|||||| ||| |||| ||||||| ||||| |||||||||||||||||||| ||| |||||| | ||| || || ||||| |||||| ||||||||||| |
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| T |
33708577 |
gtcgatctctgcagcatctagatattcaacgtgcaaagtttttgaatgatcgtcgtttcaatgtgctgtgtgcatttcttggtgatttagtgtctataaa |
33708676 |
T |
|
| Q |
201 |
cgtcagcggttgttaccagctcacctattcagccttctttgcactccttaggaactgtcctatgct |
266 |
Q |
| |
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|| || |||||| || |||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
33708677 |
tgtgagtggttgtgacaagctcaccaattcagccttctttgcactccttaggaactgtcctttgct |
33708742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 92 - 266
Target Start/End: Original strand, 33714403 - 33714577
Alignment:
| Q |
92 |
tgtcaaagtgtcgatttctacagcttctagatcttcaagatgcaaagtttttgaatgatcagcgtatcaatgagttgtctgtatatcttgctgatttggt |
191 |
Q |
| |
|
||||||| ||||||| ||| |||| ||||||||||||| ||||||||||||||||||||||| | |||||||| ||| || || ||||| |||||| || |
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| T |
33714403 |
tgtcaaattgtcgatctctgcagcatctagatcttcaatgtgcaaagtttttgaatgatcagcatttcaatgagctgtgtgcatttcttggtgatttagt |
33714502 |
T |
|
| Q |
192 |
gtctataaacgtcagcggttgttaccagctcacctattcagccttctttgcactccttaggaactgtcctatgct |
266 |
Q |
| |
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||||||||| || || |||||| || | |||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
33714503 |
gtctataaatgtgagtggttgtgacgacctcaccaattcagccttctttgcactccttaggaactgtcctttgct |
33714577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 33397156 - 33396885
Alignment:
| Q |
1 |
ctttgctctctagcacttgaagctcttcctttgagggaacttatcctccaagattgcttcaattatacatatcatgggatctcttatctactgtcaaagt |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||| |||||| | |||||| ||||| || |||||||||||| || |||||| || |
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| T |
33397156 |
ctttgcttactagcacttgaagctcttcctttgaggaaacttgtcctccgcaaatgcttcggacatacaaatgctgggatctcttacctcttgtcaaggt |
33397057 |
T |
|
| Q |
101 |
gtcgatttctacagcttctagatcttcaagatg------caaagtttttgaatgatcagcgtatcaatgagttgtctgtatatcttgctgatttggtgtc |
194 |
Q |
| |
|
|||||| ||| |||| ||||||||||||| || |||| | |||||||| ||| || ||| || |||| ||||| ||||| |||||||||||| |
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| T |
33397056 |
gtcgatctctgcagcatctagatcttcaaaattttgagtcaaaatatttgaatgttcaaagtttcatggacttgtgtgtatttcttggtgatttggtgtc |
33396957 |
T |
|
| Q |
195 |
tataaacgtcagcggttgttaccagctcacctattcagccttctttgcactccttaggaactgtcctatgct |
266 |
Q |
| |
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||||||| ||| |||||| || |||||| | || ||||||| ||||||||||||| ||| |||||| |||| |
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| T |
33396956 |
tataaacctcaatggttgtgacaagctcaacaatgcagccttatttgcactccttaagaattgtcctttgct |
33396885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 33093407 - 33093539
Alignment:
| Q |
18 |
tgaagctcttcctttgagggaacttatcctccaagattgcttcaattatacatatcatgggatctcttatctactgtcaaagtgtcgatttctacagctt |
117 |
Q |
| |
|
||||| ||||||||| ||| | ||| |||| |||||||||| | | ||||||||| |||||||||||| | ||||||||||| ||||| | |||| | |
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|
| T |
33093407 |
tgaagatcttcctttaaggaaccttgtccttcaagattgctgcgaatatacatatttcgggatctcttatttcttgtcaaagtgtagatttgtgcagcat |
33093506 |
T |
|
| Q |
118 |
ctagatcttcaagatgcaaagtttttgaatgat |
150 |
Q |
| |
|
||| |||||||| |||||||||||||||||||| |
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| T |
33093507 |
ctaaatcttcaaaatgcaaagtttttgaatgat |
33093539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 261
Target Start/End: Original strand, 37580285 - 37580540
Alignment:
| Q |
6 |
ctctctagcacttgaagctcttcctttgagggaacttatcctccaagattgcttcaattatacatatcatgggatctcttatctactgtcaaagtgtcga |
105 |
Q |
| |
|
|||| |||||||||| ||| |||||||||| ||||| ||||| ||||||||| ||| || |||||| |||||| | |||| || |||||||||||| | |
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| T |
37580285 |
ctctttagcacttgaccctcctcctttgaggaaacttgtcctcaaagattgctccaactacacatattctgggatatattatttattgtcaaagtgtcaa |
37580384 |
T |
|
| Q |
106 |
tttctacagcttctagatcttcaagatgcaaagtttttgaatgatcagcgtatcaatgagttgtctgtatatcttgctgatttggtgtctataaacgtca |
205 |
Q |
| |
|
| || ||| ||||||| ||||| | |||| |||||||||||||| | | ||||| || ||| | | ||||| ||||||||||| ||| || || | |
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| T |
37580385 |
tcactgaagcatctagatattcaaaaagcaacgtttttgaatgatccacttttcaataagctgtgcgcttttcttggtgatttggtgtttattaatgtga |
37580484 |
T |
|
| Q |
206 |
gcggttgttaccagctcacctattcagccttctttgcactccttaggaactgtcct |
261 |
Q |
| |
|
| |||||| | ||||||| ||| ||||| ||||||||||||| |||||||||| |
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|
| T |
37580485 |
gtggttgtgaattgctcaccaattttgccttgtttgcactccttaagaactgtcct |
37580540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 18723796 - 18724010
Alignment:
| Q |
1 |
ctttgctctctagcacttgaagctcttcctttgagggaacttatcctccaagattgcttcaattataca--tatcatgggatctcttatctactgtcaaa |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| || |||||||| || || |||||| ||| |||||||||||||| ||||||| |
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|
| T |
18723796 |
ctttgctctctagcacttgaagctcttcctttgagcaaacttgtctcccaagattactgcacatatacacatataccgggatctcttatctcttgtcaaa |
18723895 |
T |
|
| Q |
99 |
gtgtcgatttctacagcttctagatcttcaagatgcaaagtttttgaatgatcagcgtatcaatgagttgtctgtatatcttgctgatttggtgtctata |
198 |
Q |
| |
|
|||||||||||| || | |||||||||| || |||||| ||||||||| || ||| |||||||||||| ||||| ||||| |||||| ||||||||| |
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| T |
18723896 |
gtgtcgatttctgcaacatctagatctttaaaatgcaatctttttgaataattgtcgtttcaatgagttgtatgtatttcttgatgatttcgtgtctata |
18723995 |
T |
|
| Q |
199 |
aacgtcagcggttgt |
213 |
Q |
| |
|
|| || || |||||| |
|
|
| T |
18723996 |
aatgtgagtggttgt |
18724010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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