View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20270_high_27 (Length: 241)
Name: NF20270_high_27
Description: NF20270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20270_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 3 - 226
Target Start/End: Complemental strand, 36810440 - 36810219
Alignment:
| Q |
3 |
gacaagttaatcccttcaaactccccaatgaatcagcgaagtatggagtaactttattcgtttcaattgcttctgtaaagtttctaacagagagagaatt |
102 |
Q |
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| T |
36810440 |
gacaagttaatcccttcaaactccccaatgaatcagcgaagtatggagtaactttattcgtttcaattgcttctgtaaagattctaa--gagagagaatt |
36810343 |
T |
|
| Q |
103 |
caaagtgggtctctggcaaattgcagtagcaataccagcacgtgttaggaaagggcaatcgaacataaccacctcttctaaaagctcacagttcctgcac |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36810342 |
caaagtgggtctctggcaaattgcagtagcaataccagcacgtgttaggaaagggcaatcgaacataaccacctcttctaaaagctcacagttcctgcac |
36810243 |
T |
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| Q |
203 |
agttccaaaaacaatgaatcatca |
226 |
Q |
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|||||||||||||||||||||||| |
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| T |
36810242 |
agttccaaaaacaatgaatcatca |
36810219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 27005192 - 27005023
Alignment:
| Q |
1 |
aagacaagttaatcccttcaaactccccaatgaatcagcgaagtatggagtaactttattcgtttcaattgcttctgtaaagtttctaacagagagagaa |
100 |
Q |
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|||||||||||||||||||||| |||| ||||||||| ||||||||||||||| |||||| | || ||||||| ||| || |||||||||| |||| |
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| T |
27005192 |
aagacaagttaatcccttcaaagtcccgaatgaatcaacgaagtatggagtaattttattgaatccatttgcttcctgaaaattactaacagagaaagaa |
27005093 |
T |
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| Q |
101 |
ttcaaagtgggtctctggcaaattgcagtagcaataccagcacgtgttaggaaagggcaatcgaacataa |
170 |
Q |
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| T |
27005092 |
ttcaaagtgggtctctggtagattgcagaagcaataccatcatgtgttaggaattggcaatcgaacataa |
27005023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 36876244 - 36876349
Alignment:
| Q |
1 |
aagacaagttaatcccttcaaactccccaatgaatcagcgaagtatggagtaactttattcgtttcaattgcttctgtaaagtttctaacagagagagaa |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||| | ||||||||||||| |||||| |||||||||||||| |||||||| ||||||||| ||| |
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| T |
36876244 |
aagacaagttaatcccttcaaactccacaatgaatcaacaaagtatggagtaattttattagtttcaattgcttcaataaagtttgtaacagagaaagat |
36876343 |
T |
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| Q |
101 |
ttcaaa |
106 |
Q |
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|||||| |
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| T |
36876344 |
ttcaaa |
36876349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 33093340 - 33093144
Alignment:
| Q |
17 |
ttcaaactccccaatgaatcagcgaagtatggagtaactttattcgtttcaattgcttctgtaaagtttctaacagagagagaattcaaagtgggtctct |
116 |
Q |
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||||||||| |||| |||||| |||||||| |||||| || || |||| ||| ||| ||||||| | |||||||| |||| |||| | ||||||| |
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| T |
33093340 |
ttcaaactcaccaacgaatcaatgaagtatgaagtaacatttttgctttctcttggttccataaagttgccaacagagaaagaagacaaacttggtctct |
33093241 |
T |
|
| Q |
117 |
ggcaaattgcagtagcaataccagcacgtgttaggaaagggcaatcgaacataaccacctcttctaaaagctcacagttcctgcacagttccaaaaa |
213 |
Q |
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| T |
33093240 |
catagattgcagaagcaataccagcatgagttagtaaaggacattctaacataaccacctcatctagaagcttacagttgcttcacaattcaaaaaa |
33093144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 196
Target Start/End: Complemental strand, 37580155 - 37580050
Alignment:
| Q |
91 |
agagagagaattcaaagtgggtctctggcaaattgcagtagcaataccagcacgtgttaggaaagggcaatcgaacataaccacctcttctaaaagctca |
190 |
Q |
| |
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||||| |||| ||||||| ||||| ||||| ||||||| ||| |||||| || ||||| | |||||||| |||| |||||||||||||| || |||| |
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| T |
37580155 |
agagaaagaagtcaaagtcggtctgtggcagattgcagaagccataccatcatctgttatgcgagggcaataaaacaaaaccacctcttctagaaactca |
37580056 |
T |
|
| Q |
191 |
cagttc |
196 |
Q |
| |
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|||||| |
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| T |
37580055 |
cagttc |
37580050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 33397263 - 33397367
Alignment:
| Q |
92 |
gagagagaattcaaagtgggtctctggcaaattgcagtagcaataccagcacgtgttaggaaagggcaatcgaacataaccacctcttctaaaagctcac |
191 |
Q |
| |
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|||| |||||||||||| |||||||| || ||||||| ||||| |||| || ||| ||| ||| |||| | ||||||||||| ||||| || || | ||| |
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| T |
33397263 |
gagaaagaattcaaagttggtctctgacatattgcagaagcaagaccatcatgtgatagcaaatggcattggaacataaccaactcttgtagaaacacac |
33397362 |
T |
|
| Q |
192 |
agttc |
196 |
Q |
| |
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||||| |
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| T |
33397363 |
agttc |
33397367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 33714206 - 33714131
Alignment:
| Q |
104 |
aaagtgggtctctggcaaattgcagtagcaataccagcacgtgttaggaaagggcaatcgaacataaccacctctt |
179 |
Q |
| |
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||||| ||||||||| | ||||||| ||||||||||||| |||||| | || |||| | | ||||||||||||||| |
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| T |
33714206 |
aaagtcggtctctggtagattgcagaagcaataccagcatgtgttatggaacggcatttgtacataaccacctctt |
33714131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 18723704 - 18723610
Alignment:
| Q |
130 |
agcaataccagcacgtgttaggaaagggcaatcgaacataaccacctcttctaaaagctcacagttcctgcacagttccaaaaacaatgaatcat |
224 |
Q |
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||||||||||| || ||||| ||||||||| || ||||||||| ||||||| | ||| || |||||| | ||||||| |||||||||||||||| |
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| T |
18723704 |
agcaataccagtacatgttatgaaagggcattcaaacataaccgcctcttccagaagttcccagttcatacacagttgaaaaaacaatgaatcat |
18723610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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