View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20270_high_28 (Length: 237)
Name: NF20270_high_28
Description: NF20270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20270_high_28 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 1563767 - 1563701
Alignment:
| Q |
154 |
gaagaacaagaaacatgaaagaattcttacctaatacaagctttaactccagctacttcaaaatatt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1563767 |
gaagaacaagaaacatgaaagaattcttacctaatacaagctttaactccagctacttcaaaatatt |
1563701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 1563879 - 1563822
Alignment:
| Q |
39 |
aaaataataacaaacaaaaaacattgcacattgcaagaaaccaagtttcaagaatctt |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1563879 |
aaaataataacaaacaaaaaacattgcacattgcaagaaaccaagtttcaagaatctt |
1563822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University