View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20270_high_30 (Length: 231)
Name: NF20270_high_30
Description: NF20270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20270_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 4 - 212
Target Start/End: Original strand, 1985116 - 1985324
Alignment:
| Q |
4 |
acatcatcagcattttcttctgatgaaaagaattttaactcaagcatctttctcaaaacaaataatggaatttgattctcaagcatcacaatatccctca |
103 |
Q |
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| T |
1985116 |
acatcatcagcattttcttctgatgaaaagaattttaactcaagcatctttctcaaaacaaataatggaatttgattctcaagcatcacaatatccctca |
1985215 |
T |
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| Q |
104 |
aaattgcattaggagataatctcctcccaacatagttcacaaaatgagacatgttggaagaaattacctttcttgattcttcttgcatggcataaaattg |
203 |
Q |
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| T |
1985216 |
aaattgcattaggagataatctcctcccaacatagttcacaaaatgagacatgttggaagaaattacctttcttgattcttcttgcatggcataaaattg |
1985315 |
T |
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| Q |
204 |
aaggaactc |
212 |
Q |
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||||||||| |
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| T |
1985316 |
aaggaactc |
1985324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 114
Target Start/End: Complemental strand, 1948180 - 1948098
Alignment:
| Q |
32 |
agaattttaactcaagcatctttctcaaaacaaataatggaatttgattctcaagcatcacaatatccctcaaaattgcatta |
114 |
Q |
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| T |
1948180 |
agaatttgaactcaagcaattttctcaaaacaaataacggaatttgattctcgagcataacaatgtctctcaacatcgcatta |
1948098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 1978234 - 1978308
Alignment:
| Q |
40 |
aactcaagcatctttctcaaaacaaataatggaatttgattctcaagcatcacaatatccctcaaaattgcatta |
114 |
Q |
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| T |
1978234 |
aactcaagcaattttctcaaaaccattaatggaatttgattctcaagcataacaatgtctttcaacattgcatta |
1978308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 131
Target Start/End: Complemental strand, 5625226 - 5625128
Alignment:
| Q |
33 |
gaattttaactcaagcatctttctcaaaacaaataatggaatttgattctcaagcatcacaatatccctcaaaattgcattaggagataatctcctccc |
131 |
Q |
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|||||| ||||| | |||||||||||||| |||||| || |||||||| |||||||| || || || |||| ||||||||| || |||| ||||||| |
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| T |
5625226 |
gaatttaaactccaacatctttctcaaaataaataaagggatttgattttcaagcattactatgtctttcaagattgcattatgacctaatttcctccc |
5625128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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