View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20270_high_5 (Length: 457)
Name: NF20270_high_5
Description: NF20270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20270_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 142 - 440
Target Start/End: Complemental strand, 11368413 - 11368115
Alignment:
| Q |
142 |
ctcacttatgcaaaagcatagaagagaatccaaaattggtgtgtctaaccaagaaaaatactccacacagcataaaaatagctcctgagtatcttttgga |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11368413 |
ctcacttatgcaaaagcatagaagagaatccaaaattggtgtgtctaaccaagaaaaatactccacacagcataaaaatagctcctgagtatcttttgga |
11368314 |
T |
|
| Q |
242 |
agaaaaagaaaaggaccatagagaataggctctgcaagataaaagttgaaagaattagaggccaagtagcatattatcaacttatcaatgttaaagcatg |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11368313 |
agaaaaagaaaaggaccatagagaataggctctgcaagataaaagttgaaagaattagaggccaagtagcatattatcaacttatcaatgttaaagcatg |
11368214 |
T |
|
| Q |
342 |
ctcaggtttatgtttacctccttctccttgacgtatgcaaaagaaatcatggagttggtactgtatattgtcatatgagtgtcgaagcaatgaatcttt |
440 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11368213 |
ctcaggtttatgtttacctccttcttcttgaagtatgcaaaagaaatcatggagttggtactgtatattgtcatacgagtgtcgaagcaatgaatcttt |
11368115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 11368546 - 11368477
Alignment:
| Q |
9 |
gaaaaatatcaagcgaaaaatattcaatatcatgtatatacaaatcataacatgaggtaaattatcaagt |
78 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11368546 |
gaaaaatatcaagcgaaaaatattcaatatcatgtatatacaaatcataacatgaggtaaattatcaagt |
11368477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University