View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20270_high_7 (Length: 420)
Name: NF20270_high_7
Description: NF20270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20270_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 17 - 405
Target Start/End: Complemental strand, 49019862 - 49019479
Alignment:
| Q |
17 |
agttggaaggtaattggatcatctccaaagaaatgaagttccaaccgtttctcaaatccttcaaagccagatacagccatttggggtgtagagggtaatg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49019862 |
agttggaaggtaattggatcatctccaaagaaatgaagttccaaccgtttctcaaatccttcaaagccagatacagccatttggggtgtagagggtaatg |
49019763 |
T |
|
| Q |
117 |
aataagttggatgaaacagagaaaaacagaggagttgagagtaatatttgattgaaatgttgaggttgaagtgagagaaaggattnnnnnnntgaatgag |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
49019762 |
aataagttggatgaaacagagaaaaacagaggagttgagagtaatatttgattgaaatgttgaggttgaagtgagagaaaggatt-ggggggtgaatgag |
49019664 |
T |
|
| Q |
217 |
atttataggtgtgtatgaataagaatgagagtattaagaagaagaagtgtgagagtgtttagaaaagagcatgcgggtgatggaaccaagaatcatgatt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49019663 |
atttataggtgtgtatgaataagaatgagagtatt---aagaagaagtgtgagagtgtttagaaaagagcatgcgggtgatggaaccaagaatcatgatt |
49019567 |
T |
|
| Q |
317 |
gtaggcataatgaagtgagtaggattatgatatgcaacatttatttttgttaagtgnnnnnnnnagtgcaaccttcaattgttctttgt |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
49019566 |
gtaggcataatgaagtgagtaggattatgatatgcaacatttatttttgttaagtgtttttttg-gtgcaaccttcaattgttctttgt |
49019479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 277 - 355
Target Start/End: Original strand, 7082175 - 7082253
Alignment:
| Q |
277 |
agaaaagagcatgcgggtgatggaaccaagaatcatgattgtaggcataatgaagtgagtaggattatgatatgcaaca |
355 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||| | ||||||||||||||| | |||||||||||||||||| |
|
|
| T |
7082175 |
agaagagagcatgcgggtgatgaaaccaagaatcatgattttgggcataatgaagtgaatgggattatgatatgcaaca |
7082253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 7081962 - 7082019
Alignment:
| Q |
30 |
ttggatcatctccaaagaaatgaagttccaaccgtttctcaaatccttcaaagccaga |
87 |
Q |
| |
|
|||||||||| ||||||||||||||||| || | ||| ||||| |||||||| ||||| |
|
|
| T |
7081962 |
ttggatcatcaccaaagaaatgaagttctaatcttttttcaaagccttcaaaaccaga |
7082019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University